myRT

myRT report for GCA_002160415.1_ASM216041v1

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Seq: NFKN01000001.1 Drancourtella sp. An177 An177_contig_1, whole genome shotgun sequence (203204 bp)
Overview 1 RT 1: 198891-202266 bp Neighborhood of RT #1 [198891, 202580] dnaG DUF3991 Toprim_2 RVT_N RVT-GII YkfC Feature: gene Location: 198891-199853 bp Feature: domain Description: dnaG Location: 199023-199200 bp Feature: domain Description: dnaG Location: 1 99023-1 99200 bp Feature: domain Description: DUF3991 Location: 199254-199461 bp Feature: domain Description: DUF3991 Location: 1 99254-1 99461 bp Feature: domain Description: Toprim_2 Location: 199485-199797 bp Feature: domain Description: Toprim_2 Location: 1 99485-1 99797 bp Feature: gene Location: 199874-200824 bp Feature: gene Location: 200943-202580 bp Feature: RT Description: RVT_N Location: 200994-201237 bp Feature: RT Description: RVT_N Location: 200994-201 237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201282-201930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201 282-201 930 bp Feature: domain Description: YkfC Location: 202116-202266 bp Feature: domain Description: YkfC Location: 2021 1 6-202266 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), DUF3991 (pfam13154), Toprim_2 (pfam13155), RVT_N (pfam13655), RVT-GII, YkfC (COG3344)

Seq: NFKN01000065.1 Drancourtella sp. An177 An177_contig_65, whole genome shotgun sequence (2508 bp)
Overview 1 RT 1: 107-2066 bp Neighborhood of RT #1 [107, 2066] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 107-1921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374-1190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374-1190 bp Feature: domain Description: Intron_maturas2 Location: 1259-1589 bp Feature: domain Description: Intron_maturas2 Location: 12 59-1589 bp Feature: domain Description: HNHc Note: nucleases Location: 1739-1886 bp Feature: domain Description: HNHc Note: nucleases Location: 1739-1886 bp Feature: gene Location: 1884-2066 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFKN01000057.1 Drancourtella sp. An177 An177_contig_57, whole genome shotgun sequence (3797 bp)
Overview 1 RT 1: 42-3715 bp Neighborhood of RT #1 [42, 3715] COG4646 RVT-GII HNHc Feature: gene Location: 42-635 bp Feature: domain Description: COG4646 Location: 108-525 bp Feature: domain Description: COG4646 Location: 108-525 bp Feature: gene Location: 1432-3333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1750-2476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1750-2476 bp Feature: domain Description: HNHc Note: nucleases Location: 3055-3223 bp Feature: domain Description: HNHc Note: nucleases Location: 3 055-3 223 bp Feature: gene Location: 3410-3715 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), COG4646 (Adenine-specific DNA methylase, N12 class )

Seq: NFKN01000035.1 Drancourtella sp. An177 An177_contig_35, whole genome shotgun sequence (26819 bp)
Overview 1 RT 1: 11120-14669 bp Neighborhood of RT #1 [11120, 14669] RVT-GII GIIM Cauli_VI RNase_HI_bacteria_like Feature: gene Location: 11120-11305 bp Feature: gene Location: 11423-11575 bp Feature: gene Location: 11686-13077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12001-12625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12001-12625 bp Feature: domain Description: GIIM Note: maturase Location: 12682-12898 bp Feature: domain Description: GIIM Note: maturase Location: 12682-12898 bp Feature: gene Location: 13173-13844 bp Feature: domain Description: Cauli_VI Location: 13188-13311 bp Feature: domain Description: Cauli_VI Location: 13188-13311 bp Feature: domain Description: RNase_HI_bacteria_like Location: 13422-13824 bp Feature: domain Description: RNase_HI_bacteria_like Location: 134 22-13824 bp Feature: gene Location: 14001-14669 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Cauli_VI (pfam01693), RNase_HI_bacteria_like (cd09277)

Seq: NFKN01000052.1 Drancourtella sp. An177 An177_contig_52, whole genome shotgun sequence (7590 bp)
Overview 1 RT 1: 4772-7299 bp Neighborhood of RT #1 [4772, 7514] PRK09639 RVT-GII GIIM Feature: gene Location: 4772-5203 bp Feature: gene Location: 5209-5589 bp Feature: domain Description: PRK09639 Location: 5413-5587 bp Feature: domain Description: PRK09639 Location: 5 413-5 5 87 bp Feature: gene Location: 6210-7514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6411-7029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6411-7029 bp Feature: domain Description: GIIM Note: maturase Location: 7083-7299 bp Feature: domain Description: GIIM Note: maturase Location: 7083-7299 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09639 (RNA polymerase sigma factor SigX; Provisional), RVT-GII, GIIM (pfam08388)