myRT

myRT report for GCA_002160445.1_ASM216044v1

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Seq: NFKP01000020.1 Anaerotruncus colihominis strain An175 An175_contig_20, whole genome shotgun sequence (75723 bp)
Overview 1 RT 1: 49765-54487 bp 2 RT 2: 63806-68380 bp Neighborhood of RT #1 [49765, 54513] RVT_N RVT-GII GIIM HNH TraC-F-type N6_N4_Mtase Neighborhood of RT #2 [63806, 68409] Relaxase MobC RVT-GII GIIM HTH_XRE DBD_HTH Cys_rich_KTR Feature: gene Location: 49765-49992 bp Feature: gene Location: 50014-50349 bp Feature: gene Location: 50884-52563 bp Ori: OUP68268.1 Feature: domain Description: RVT_N Location: 50962-51202 bp Feature: domain Description: RVT_N Location: 50962-51 202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51250-51910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 250-51 91 0 bp Feature: domain Description: GIIM Note: maturase Location: 51964-52198 bp Feature: domain Description: GIIM Note: maturase Location: 51 964-521 98 bp Feature: domain Description: HNH Note: nucleases Location: 52411-52528 bp Feature: domain Description: HNH Note: nucleases Location: 5241 1 -52528 bp Feature: gene Location: 52568-53560 bp Ori: OUP68269.1 Feature: domain Description: TraC-F-type Location: 52652-53384 bp Feature: domain Description: TraC-F-type Location: 52652-53384 bp Feature: gene Location: 53557-54513 bp Ori: OUP68270.1 Feature: domain Description: N6_N4_Mtase Location: 53632-54487 bp Feature: domain Description: N6_N4_Mtase Location: 53632-54487 bp Feature: gene Location: 63806-65140 bp Ori: OUP68277.1 Feature: domain Description: Relaxase Location: 63836-64523 bp Feature: domain Description: Relaxase Location: 63836-64523 bp Feature: gene Location: 65101-65430 bp Ori: OUP68278.1 Feature: domain Description: MobC Location: 65278-65398 bp Feature: domain Description: MobC Location: 65278-65398 bp Feature: gene Location: 65640-66920 bp Ori: OUP68279.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65844-66459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65844-66459 bp Feature: domain Description: GIIM Note: maturase Location: 66519-66744 bp Feature: domain Description: GIIM Note: maturase Location: 6651 9-66744 bp Feature: gene Location: 67469-67825 bp Ori: OUP68293.1 Feature: domain Description: HTH_XRE Location: 67514-67685 bp Feature: domain Description: HTH_XRE Location: 6751 4-67685 bp Feature: domain Description: DBD_HTH Location: 67712-67805 bp Feature: domain Description: DBD_HTH Location: 6771 2-67805 bp Feature: gene Location: 68224-68409 bp Ori: OUP68280.1 Feature: domain Description: Cys_rich_KTR Location: 68239-68380 bp Feature: domain Description: Cys_rich_KTR Location: 68239-68380 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), TraC-F-type (TIGR02746), N6_N4_Mtase (pfam01555), Relaxase (pfam03432), MobC (pfam05713), HTH_XRE (smart00530), DBD_HTH (pfam18430)
Cys_rich_KTR (pfam14205)

Seq: NFKP01000004.1 Anaerotruncus colihominis strain An175 An175_contig_4, whole genome shotgun sequence (185442 bp)
Overview 1 RT 1: 10665-12446 bp Neighborhood of RT #1 [10665, 12502] RVT-GII COG2129 Feature: gene Location: 10665-11041 bp Feature: gene Location: 11045-11506 bp Feature: gene Location: 11666-11890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11672-11882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11672 -11882 bp Feature: gene Location: 12031-12266 bp Feature: gene Location: 12269-12502 bp Feature: domain Description: COG2129 Location: 12275-12446 bp Feature: domain Description: COG2 12 9 Location: 12 2 75-12 446 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG2129 (Predicted phosphoesterase, related to the Icc protein )

Seq: NFKP01000017.1 Anaerotruncus colihominis strain An175 An175_contig_17, whole genome shotgun sequence (86568 bp)
Overview 1 RT 1: 77740-85120 bp Neighborhood of RT #1 [77740, 85131] COG1373 recQ RVT-UG5 nitrilase spore_sigmaK YsdA Feature: gene Location: 77740-79044 bp Ori: OUP68548.1 Feature: domain Description: COG1373 Location: 77752-79012 bp Feature: domain Description: COG13 73 Location: 77752-79012 bp Feature: gene Location: 79055-80908 bp Ori: OUP68549.1 Feature: domain Description: recQ Location: 79070-80879 bp Feature: domain Description: recQ Location: 79070-80879 bp Feature: gene Location: 80898-84047 bp Ori: OUP68550.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 81381-81843 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 813 81-81843 bp Feature: domain Description: nitrilase Location: 83244-83919 bp Feature: domain Description: nitrilase Location: 83 244-83 919 bp Feature: gene Location: 84349-84549 bp Ori: OUP68551.1 Feature: domain Description: spore_sigmaK Location: 84376-84541 bp Feature: domain Description: spore_sigmaK Location: 843 76-84541 bp Feature: gene Location: 84862-85131 bp Ori: OUP68552.1 Feature: domain Description: YsdA Location: 84874-85120 bp Feature: domain Description: YsdA Location: 84874-85120 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1373 (Predicted ATPase, AAA+ superfamily ), recQ (TIGR01389), RVT-UG5, nitrilase (cl11424), spore_sigmaK (TIGR02846), YsdA (COG3326)

Seq: NFKP01000003.1 Anaerotruncus colihominis strain An175 An175_contig_3, whole genome shotgun sequence (227320 bp)
Overview 1 RT 1: 6906-11413 bp Neighborhood of RT #1 [6906, 11413] ThiF_MoeB_HesA_family RVT-Retrons Resolvase Recombinase Feature: gene Location: 6906-7676 bp Feature: gene Location: 7627-8334 bp Ori: OUP70560.1 Feature: domain Description: ThiF_MoeB_HesA_family Location: 7705-8299 bp Feature: domain Description: ThiF_MoeB_HesA_family Location: 7705-8299 bp Feature: gene Location: 8658-9812 bp Ori: OUP70561.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8931-9525 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8931-9525 bp Feature: gene Location: 9822-10880 bp Ori: OUP70562.1 Feature: domain Description: Resolvase Location: 9972-10416 bp Feature: domain Description: Resolvase Location: 9972-104 16 bp Feature: domain Description: Recombinase Location: 10476-10791 bp Feature: domain Description: Recombinase Location: 104 76-10791 bp Feature: gene Location: 10895-11413 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ThiF_MoeB_HesA_family (cd00757), RVT-Retrons, Resolvase (smart00857), Recombinase (pfam07508)

Seq: NFKP01000023.1 Anaerotruncus colihominis strain An175 An175_contig_23, whole genome shotgun sequence (71183 bp)
Overview 1 RT 1: 65840-70342 bp Neighborhood of RT #1 [65840, 70342] CstA CstA RVT-Retrons HTH_AsnC-type Feature: gene Location: 65840-66043 bp Feature: gene Location: 66044-67504 bp Ori: OUP68040.1 Feature: domain Description: CstA Location: 66047-66515 bp Feature: domain Description: CstA Location: 66047-665 15 bp Feature: domain Description: CstA Location: 66524-67367 bp Feature: domain Description: CstA Location: 665 24-67367 bp Feature: gene Location: 67875-68999 bp Ori: OUP68041.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 68211-68742 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 68211-68742 bp Feature: gene Location: 69075-69371 bp Ori: OUP68042.1 Feature: domain Description: HTH_AsnC-type Location: 69087-69207 bp Feature: domain Description: HTH_AsnC-type Location: 69087-69207 bp Feature: gene Location: 69362-70342 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CstA (pfam02554), RVT-Retrons, HTH_AsnC-type (pfam13404)

Seq: NFKP01000013.1 Anaerotruncus colihominis strain An175 An175_contig_13, whole genome shotgun sequence (112179 bp)
Overview 1 RT 1: 25025-30234 bp Neighborhood of RT #1 [25025, 30251] DUF3751 Avd_like RVT-DGRs ChiA1_BD ChiA1_BD Feature: gene Location: 25025-25723 bp Ori: OUP68893.1 Feature: domain Description: DUF3751 Location: 25055-25484 bp Feature: domain Description: DUF3751 Location: 25055-25484 bp Feature: gene Location: 25938-26339 bp Ori: OUP68894.1 Feature: domain Description: Avd_like Location: 25983-26310 bp Feature: domain Description: Avd_like Location: 25983-26 310 bp Feature: gene Location: 26681-27766 bp Ori: OUP68895.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 26891-27497 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 26 891-27497 bp Feature: gene Location: 27735-29441 bp Feature: gene Location: 29460-30251 bp Ori: OUP68897.1 Feature: domain Description: ChiA1_BD Location: 29760-29820 bp Feature: domain Description: ChiA1_BD Location: 2976 0-29820 bp Feature: domain Description: ChiA1_BD Location: 30117-30234 bp Feature: domain Description: ChiA1_BD Location: 30117-30234 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3751 (pfam12571), Avd_like (cd16376), RVT-DGRs, ChiA1_BD (cd12214)

Seq: NFKP01000007.1 Anaerotruncus colihominis strain An175 An175_contig_7, whole genome shotgun sequence (149881 bp)
Overview 1 RT 1: 118257-120933 bp Neighborhood of RT #1 [118257, 120938] Phage_holin_5_2 RVT-DGRs Phage_XkdX Feature: gene Location: 118257-118550 bp Ori: OUP69869.1 Feature: domain Description: Phage_holin_5_2 Location: 118302-118536 bp Feature: domain Description: Phage_holin_5_2 Location: 118302-118536 bp Feature: gene Location: 118564-118887 bp Feature: gene Location: 118905-120101 bp Ori: OUP69871.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 119100-119817 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 119100-119817 bp Feature: gene Location: 120313-120798 bp Feature: gene Location: 120795-120938 bp Ori: OUP69873.1 Feature: domain Description: Phage_XkdX Location: 120816-120933 bp Feature: domain Description: Phage_XkdX Location: 120816-120933 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_5_2 (pfam16079), RVT-DGRs, Phage_XkdX (pfam09693)

Seq: NFKP01000006.1 Anaerotruncus colihominis strain An175 An175_contig_6, whole genome shotgun sequence (151146 bp)
Overview 1 RT 1: 140-4572 bp Neighborhood of RT #1 [140, 5039] RVT-GII TraG_VirD4 DnaG DUF3991 Toprim_2 AAA_25 Feature: gene Location: 140-2029 bp Ori: OUP69943.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 458-1199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 458 -1199 bp Feature: gene Location: 2717-3049 bp Feature: domain Description: TraG_VirD4 Location: 2855-3041 bp Feature: domain Description: TraG_VirD4 Location: 28 55-3041 bp Feature: gene Location: 3138-5039 bp Ori: OUP69944.1 Feature: domain Description: DnaG Location: 3297-3390 bp Feature: domain Description: DnaG Location: 3297-3390 bp Feature: domain Description: DUF3991 Location: 3480-3687 bp Feature: domain Description: DUF3991 Location: 348 0-368 7 bp Feature: domain Description: Toprim_2 Location: 3711-3978 bp Feature: domain Description: Toprim_2 Location: 3711-3978 bp Feature: domain Description: AAA_25 Location: 4062-4572 bp Feature: domain Description: AAA_25 Location: 4062-4572 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, TraG_VirD4, DnaG (COG0358), DUF3991 (pfam13154), Toprim_2 (pfam13155), AAA_25 (pfam13481)