myRT

myRT report for GCA_002160465.1_ASM216046v1

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Seq: NFKQ01000018.1 Anaerotruncus colihominis strain An174 An174_contig_18, whole genome shotgun sequence (86568 bp)
Overview 1 RT 1: 77740-85120 bp Neighborhood of RT #1 [77740, 85131] COG1373 recQ RVT-UG5 nitrilase spore_sigmaK YsdA Feature: gene Location: 77740-79044 bp Ori: OUP72979.1 Feature: domain Description: COG1373 Location: 77752-79012 bp Feature: domain Description: COG1 373 Location: 77752-7901 2 bp Feature: gene Location: 79055-80908 bp Ori: OUP72980.1 Feature: domain Description: recQ Location: 79070-80879 bp Feature: domain Description: recQ Location: 79070-80879 bp Feature: gene Location: 80898-84047 bp Ori: OUP72981.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 81381-81843 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 81 381 -81 843 bp Feature: domain Description: nitrilase Location: 83244-83919 bp Feature: domain Description: nitrilase Location: 83244-8391 9 bp Feature: gene Location: 84349-84549 bp Ori: OUP72982.1 Feature: domain Description: spore_sigmaK Location: 84376-84541 bp Feature: domain Description: spore_sigmaK Location: 84376-84541 bp Feature: gene Location: 84862-85131 bp Ori: OUP72983.1 Feature: domain Description: YsdA Location: 84874-85120 bp Feature: domain Description: YsdA Location: 84874-851 20 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1373 (Predicted ATPase, AAA+ superfamily ), recQ (TIGR01389), RVT-UG5, nitrilase (cl11424), spore_sigmaK (TIGR02846), YsdA (COG3326)

Seq: NFKQ01000002.1 Anaerotruncus colihominis strain An174 An174_contig_2, whole genome shotgun sequence (227320 bp)
Overview 1 RT 1: 215908-220415 bp Neighborhood of RT #1 [215908, 220415] Resolvase Recombinase RVT-Retrons ThiF_MoeB_HesA_family Feature: gene Location: 215908-216426 bp Feature: gene Location: 216441-217499 bp Ori: OUP76102.1 Feature: domain Description: Resolvase Location: 216591-217035 bp Feature: domain Description: Resolvase Location: 2 16591-2 17035 bp Feature: domain Description: Recombinase Location: 217095-217410 bp Feature: domain Description: Recombinase Location: 2 17095-2 17410 bp Feature: gene Location: 217509-218663 bp Ori: OUP76103.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 217782-218376 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 17782 -2 18376 bp Feature: gene Location: 218987-219694 bp Ori: OUP76104.1 Feature: domain Description: ThiF_MoeB_HesA_family Location: 219065-219659 bp Feature: domain Description: ThiF_MoeB_HesA_family Location: 2 19065-2 19659 bp Feature: gene Location: 219645-220415 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Resolvase (smart00857), Recombinase (pfam07508), RVT-Retrons, ThiF_MoeB_HesA_family (cd00757)

Seq: NFKQ01000037.1 Anaerotruncus colihominis strain An174 An174_contig_37, whole genome shotgun sequence (31211 bp)
Overview 1 RT 1: 11265-15839 bp Neighborhood of RT #1 [11265, 15868] Relaxase MobC RVT-GII GIIM HTH_XRE DBD_HTH Cys_rich_KTR Feature: gene Location: 11265-12599 bp Ori: OUP70796.1 Feature: domain Description: Relaxase Location: 11295-11982 bp Feature: domain Description: Relaxase Location: 11295-11982 bp Feature: gene Location: 12560-12889 bp Ori: OUP70797.1 Feature: domain Description: MobC Location: 12737-12857 bp Feature: domain Description: MobC Location: 1273 7-12857 bp Feature: gene Location: 13099-14379 bp Ori: OUP70798.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13303-13918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 3 03 -13 918 bp Feature: domain Description: GIIM Note: maturase Location: 13978-14203 bp Feature: domain Description: GIIM Note: maturase Location: 13 978-14203 bp Feature: gene Location: 14928-15284 bp Ori: OUP70818.1 Feature: domain Description: HTH_XRE Location: 14973-15144 bp Feature: domain Description: HTH_XRE Location: 14973 -15144 bp Feature: domain Description: DBD_HTH Location: 15171-15264 bp Feature: domain Description: DBD_HTH Location: 15171-15264 bp Feature: gene Location: 15683-15868 bp Ori: OUP70799.1 Feature: domain Description: Cys_rich_KTR Location: 15698-15839 bp Feature: domain Description: Cys_rich_KTR Location: 15698-1583 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), MobC (pfam05713), RVT-GII, GIIM (pfam08388), HTH_XRE (smart00530), DBD_HTH (pfam18430), Cys_rich_KTR (pfam14205)

Seq: NFKQ01000024.1 Anaerotruncus colihominis strain An174 An174_contig_24, whole genome shotgun sequence (70994 bp)
Overview 1 RT 1: 65651-70153 bp Neighborhood of RT #1 [65651, 70153] CstA CstA RVT-Retrons HTH_AsnC-type Feature: gene Location: 65651-65854 bp Feature: gene Location: 65855-67315 bp Ori: OUP72336.1 Feature: domain Description: CstA Location: 65858-66326 bp Feature: domain Description: CstA Location: 65858-66326 bp Feature: domain Description: CstA Location: 66335-67178 bp Feature: domain Description: CstA Location: 66335-67178 bp Feature: gene Location: 67686-68810 bp Ori: OUP72337.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 68022-68553 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 68022-68553 bp Feature: gene Location: 68886-69182 bp Ori: OUP72338.1 Feature: domain Description: HTH_AsnC-type Location: 68898-69018 bp Feature: domain Description: HTH_AsnC-type Location: 68898-69018 bp Feature: gene Location: 69173-70153 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CstA (pfam02554), RVT-Retrons, HTH_AsnC-type (pfam13404)

Seq: NFKQ01000015.1 Anaerotruncus colihominis strain An174 An174_contig_15, whole genome shotgun sequence (95763 bp)
Overview 1 RT 1: 64139-66815 bp Neighborhood of RT #1 [64139, 66820] Phage_holin_5_2 RVT-DGRs Phage_XkdX Feature: gene Location: 64139-64432 bp Ori: OUP73328.1 Feature: domain Description: Phage_holin_5_2 Location: 64184-64418 bp Feature: domain Description: Phage_holin_5 _2 Location: 64184-64418 bp Feature: gene Location: 64446-64769 bp Feature: gene Location: 64787-65983 bp Ori: OUP73330.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 64982-65699 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 64982-65 699 bp Feature: gene Location: 66195-66680 bp Feature: gene Location: 66677-66820 bp Ori: OUP73332.1 Feature: domain Description: Phage_XkdX Location: 66698-66815 bp Feature: domain Description: Phage_XkdX Location: 66698-66815 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_5_2 (pfam16079), RVT-DGRs, Phage_XkdX (pfam09693)

Seq: NFKQ01000012.1 Anaerotruncus colihominis strain An174 An174_contig_12, whole genome shotgun sequence (112187 bp)
Overview 1 RT 1: 25025-30234 bp Neighborhood of RT #1 [25025, 30251] DUF3751 Avd_like RVT-DGRs ChiA1_BD ChiA1_BD Feature: gene Location: 25025-25723 bp Ori: OUP73704.1 Feature: domain Description: DUF3751 Location: 25055-25484 bp Feature: domain Description: DUF3751 Location: 25055-25484 bp Feature: gene Location: 25938-26339 bp Ori: OUP73705.1 Feature: domain Description: Avd_like Location: 25983-26310 bp Feature: domain Description: Avd_like Location: 25983-26 310 bp Feature: gene Location: 26681-27766 bp Ori: OUP73706.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 26891-27497 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 26 891-27497 bp Feature: gene Location: 27735-29441 bp Feature: gene Location: 29460-30251 bp Ori: OUP73708.1 Feature: domain Description: ChiA1_BD Location: 29760-29820 bp Feature: domain Description: ChiA1_BD Location: 2976 0-29820 bp Feature: domain Description: ChiA1_BD Location: 30117-30234 bp Feature: domain Description: ChiA1_BD Location: 30117-30234 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3751 (pfam12571), Avd_like (cd16376), RVT-DGRs, ChiA1_BD (cd12214)

Seq: NFKQ01000005.1 Anaerotruncus colihominis strain An174 An174_contig_5, whole genome shotgun sequence (168547 bp)
Overview 1 RT 1: 9165-10946 bp Neighborhood of RT #1 [9165, 11002] RVT-GII COG2129 Feature: gene Location: 9165-9541 bp Feature: gene Location: 9545-10006 bp Feature: gene Location: 10166-10390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10172-10382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1017 2-10382 bp Feature: gene Location: 10531-10766 bp Feature: gene Location: 10769-11002 bp Feature: domain Description: COG2129 Location: 10775-10946 bp Feature: domain Description: COG2129 Location: 107 7 5-10946 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG2129 (Predicted phosphoesterase, related to the Icc protein )

Seq: NFKQ01000006.1 Anaerotruncus colihominis strain An174 An174_contig_6, whole genome shotgun sequence (156027 bp)
Overview 1 RT 1: 3441-9451 bp Neighborhood of RT #1 [3441, 9918] Maff2 T4SS-DNA_transf RVT-GII TraG_VirD4 DnaG DUF3991 Toprim_2 AAA_25 Feature: gene Location: 3441-3656 bp Ori: OUP74867.1 Feature: domain Description: Maff2 Location: 3444-3651 bp Feature: domain Description: Maff2 Location: 3444-3651 bp Feature: gene Location: 3724-4968 bp Feature: domain Description: T4SS-DNA_transf Location: 3829-4798 bp Feature: domain Description: T4SS-DNA_transf Location: 38 29-4798 bp Feature: gene Location: 5019-6908 bp Ori: OUP74868.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5337-6078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5337-6078 bp Feature: gene Location: 7596-7928 bp Feature: domain Description: TraG_VirD4 Location: 7734-7920 bp Feature: domain Description: TraG_VirD4 Location: 7734-7920 bp Feature: gene Location: 8017-9918 bp Ori: OUP74869.1 Feature: domain Description: DnaG Location: 8176-8269 bp Feature: domain Description: DnaG Location: 8 176-8 269 bp Feature: domain Description: DUF3991 Location: 8359-8566 bp Feature: domain Description: DUF3991 Location: 8 359-8 566 bp Feature: domain Description: Toprim_2 Location: 8590-8857 bp Feature: domain Description: Toprim_2 Location: 8 590-8 8 57 bp Feature: domain Description: AAA_25 Location: 8941-9451 bp Feature: domain Description: AAA_25 Location: 8 941-9451 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Maff2 (pfam12750), T4SS-DNA_transf (pfam02534), RVT-GII, TraG_VirD4, DnaG (COG0358), DUF3991 (pfam13154), Toprim_2 (pfam13155), AAA_25 (pfam13481)

Seq: NFKQ01000029.1 Anaerotruncus colihominis strain An174 An174_contig_29, whole genome shotgun sequence (52650 bp)
Overview 1 RT 1: 49765-52528 bp Neighborhood of RT #1 [49765, 52563] RVT_N RVT-GII GIIM HNH Feature: gene Location: 49765-49992 bp Feature: gene Location: 50014-50349 bp Feature: gene Location: 50884-52563 bp Ori: OUP71961.1 Feature: domain Description: RVT_N Location: 50962-51202 bp Feature: domain Description: RVT_N Location: 509 62-51202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51250-51910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51250-519 10 bp Feature: domain Description: GIIM Note: maturase Location: 51964-52198 bp Feature: domain Description: GIIM Note: maturase Location: 519 64-5219 8 bp Feature: domain Description: HNH Note: nucleases Location: 52411-52528 bp Feature: domain Description: HNH Note: nucleases Location: 52411-52528 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)