myRT

myRT report for GCA_002160525.1_ASM216052v1

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Seq: NFKT01000023.1 Lachnoclostridium sp. An169 An169_contig_23, whole genome shotgun sequence (78893 bp)
Overview 1 RT 1: 17462-21998 bp Neighborhood of RT #1 [17462, 22012] DegV PRK03170 RVT-Retrons CoxM Feature: gene Location: 17462-18403 bp Ori: OUP82073.1 Feature: domain Description: DegV Location: 17549-18383 bp Feature: domain Description: DegV Location: 1 7549-1 8383 bp Feature: gene Location: 18471-19355 bp Ori: OUP82074.1 Feature: domain Description: PRK03170 Location: 18483-19350 bp Feature: domain Description: PRK031 70 Location: 1 8483-1 9350 bp Feature: gene Location: 19648-20712 bp Ori: OUP82075.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 19882-20437 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 9882-20437 bp Feature: gene Location: 20820-21011 bp Feature: gene Location: 21209-22012 bp Ori: OUP82119.1 Feature: domain Description: CoxM Location: 21227-21998 bp Feature: domain Description: CoxM Location: 21 227-21 998 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DegV (TIGR00762), PRK03170 (dihydrodipicolinate synthase; Provisional), RVT-Retrons, CoxM (COG1319)

Seq: NFKT01000035.1 Lachnoclostridium sp. An169 An169_contig_35, whole genome shotgun sequence (47327 bp)
Overview 1 RT 1: 44443-47045 bp Neighborhood of RT #1 [44443, 47251] GlxI_Zn SpoIIID RVT-GII GIIM Feature: gene Location: 44443-44811 bp Ori: OUP81147.1 Feature: domain Description: GlxI_Zn Location: 44458-44800 bp Feature: domain Description: GlxI_Zn Location: 44458-44800 bp Feature: gene Location: 45053-45304 bp Ori: OUP81148.1 Feature: domain Description: SpoIIID Location: 45059-45299 bp Feature: domain Description: SpoIIID Location: 45059-452 99 bp Feature: gene Location: 45947-47251 bp Ori: OUP81149.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46148-46766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46148-46766 bp Feature: domain Description: GIIM Note: maturase Location: 46820-47045 bp Feature: domain Description: GIIM Note: maturase Location: 4682 0-47045 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlxI_Zn (cd07233), SpoIIID (pfam12116), RVT-GII, GIIM (pfam08388)

Seq: NFKT01000034.1 Lachnoclostridium sp. An169 An169_contig_34, whole genome shotgun sequence (48097 bp)
Overview 1 RT 1: 41608-45335 bp Neighborhood of RT #1 [41608, 45616] pfam03781 Avd_like RVT-DGRs fliF LapA_dom Feature: gene Location: 41608-42675 bp Ori: OUP81221.1 Feature: domain Description: pfam03781 Location: 41851-42184 bp Feature: domain Description: pfam03 781 Location: 41851-42184 bp Feature: gene Location: 42850-43164 bp Ori: OUP81230.1 Feature: domain Description: Avd_like Location: 42856-43153 bp Feature: domain Description: Avd_like Location: 42856-43 153 bp Feature: gene Location: 43580-44677 bp Ori: OUP81222.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 43790-44450 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 43 790-44450 bp Feature: gene Location: 44662-45216 bp Ori: OUP81223.1 Feature: domain Description: fliF Location: 44704-44992 bp Feature: domain Description: fliF Location: 44704-44992 bp Feature: gene Location: 45230-45616 bp Ori: OUP81224.1 Feature: domain Description: LapA_dom Location: 45242-45335 bp Feature: domain Description: LapA_dom Location: 45242-453 3 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), Avd_like (cd16376), RVT-DGRs, fliF (TIGR00206), LapA_dom (pfam06305)

Seq: NFKT01000026.1 Lachnoclostridium sp. An169 An169_contig_26, whole genome shotgun sequence (65984 bp)
Overview 1 RT 1: 23220-30776 bp Neighborhood of RT #1 [23220, 30776] COG0610 RVT-UG15 TIR_2 Feature: gene Location: 23220-23543 bp Feature: gene Location: 24516-27698 bp Ori: OUP81781.1 Feature: domain Description: COG0610 Location: 24537-27513 bp Feature: domain Description: COG0610 Location: 24 537-27513 bp Feature: gene Location: 27710-29212 bp Ori: OUP81782.1 Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 28148-28544 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 2814 8-2854 4 bp Feature: gene Location: 29269-30324 bp Ori: OUP81783.1 Feature: domain Description: TIR_2 Location: 29746-30019 bp Feature: domain Description: TIR_2 Location: 2974 6-30019 bp Feature: gene Location: 30321-30776 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RVT-UG15, TIR_2 (pfam13676)