myRT

myRT report for GCA_002160595.1_ASM216059v1

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Seq: NFKW01000052.1 Bacteroides ovatus strain An161 An161_contig_52, whole genome shotgun sequence (20436 bp)
Overview 1 RT 1: 8648-13606 bp Neighborhood of RT #1 [8648, 13947] RVT-UG7 HTH_36 HTH_36 Feature: gene Location: 8648-8824 bp Feature: gene Location: 8808-10613 bp Feature: gene Location: 10682-12289 bp Ori: OUP89114.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 11069-11495 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1 1 069-1 1 495 bp Feature: gene Location: 12286-12972 bp Feature: gene Location: 13129-13947 bp Ori: OUP89123.1 Feature: domain Description: HTH_36 Location: 13168-13333 bp Feature: domain Description: HTH_36 Location: 1 31 68-1 3333 bp Feature: domain Description: HTH_36 Location: 13516-13606 bp Feature: domain Description: HTH_36 Location: 1 351 6-1 3606 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7, HTH_36 (pfam13730)

Seq: NFKW01000002.1 Bacteroides ovatus strain An161 An161_contig_2, whole genome shotgun sequence (399051 bp)
Overview 1 RT 1: 4747-8230 bp Neighborhood of RT #1 [4747, 8307] DUF4134 DUF4134 RVT-GII Intron_maturas2 HNHc DUF4134 DUF4133 Feature: gene Location: 4747-5073 bp Ori: OUP98714.1 Feature: domain Description: DUF4134 Location: 4768-5059 bp Feature: domain Description: DUF4134 Location: 4768-5059 bp Feature: gene Location: 5148-5426 bp Ori: OUP98715.1 Feature: domain Description: DUF4134 Location: 5208-5409 bp Feature: domain Description: DUF4134 Location: 52 08-5409 bp Feature: gene Location: 5968-7779 bp Ori: OUP98716.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6232-7054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 32 -7054 bp Feature: domain Description: Intron_maturas2 Location: 7243-7453 bp Feature: domain Description: Intron_maturas2 Location: 72 43-7453 bp Feature: domain Description: HNHc Note: nucleases Location: 7603-7708 bp Feature: domain Description: HNHc Note: nucleases Location: 7603-7708 bp Feature: gene Location: 7804-7998 bp Ori: OUP98717.1 Feature: domain Description: DUF4134 Location: 7894-7984 bp Feature: domain Description: DUF4134 Location: 7894-7984 bp Feature: gene Location: 8011-8307 bp Ori: OUP98718.1 Feature: domain Description: DUF4133 Location: 8053-8230 bp Feature: domain Description: DUF4133 Location: 8053-82 30 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571)

Seq: NFKW01000009.1 Bacteroides ovatus strain An161 An161_contig_9, whole genome shotgun sequence (189567 bp)
Overview 1 RT 1: 132134-136515 bp Neighborhood of RT #1 [132134, 136535] Avd_like RVT-DGRs YbdN Feature: gene Location: 132134-132616 bp Feature: gene Location: 132634-133005 bp Ori: OUP97271.1 Feature: domain Description: Avd_like Location: 132661-132964 bp Feature: domain Description: Avd_like Location: 13 2661-13 2964 bp Feature: gene Location: 133601-134839 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 133682-134396 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13 3 682-13 43 96 bp Feature: gene Location: 134799-135254 bp Feature: gene Location: 135261-136535 bp Ori: OUP97273.1 Feature: domain Description: YbdN Location: 135276-136515 bp Feature: domain Description: YbdN Location: 13 5276-13 6515 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, YbdN (COG3969)

Seq: NFKW01000021.1 Bacteroides ovatus strain An161 An161_contig_21, whole genome shotgun sequence (119643 bp)
Overview 1 RT 1: 113672-119273 bp Neighborhood of RT #1 [113672, 119527] SusD-like_3 SusD_RagB GDPD_like_2 RVT_N RVT-GII RVT-GII HTH_28 HTH_23 COG4584 Feature: gene Location: 113672-115564 bp Ori: OUP94832.1 Feature: domain Description: SusD-like_3 Location: 114026-114383 bp Feature: domain Description: SusD-like_3 Location: 114 026-114 383 bp Feature: domain Description: SusD_RagB Location: 114725-115562 bp Feature: domain Description: SusD_RagB Location: 114 725-115562 bp Feature: gene Location: 115620-116369 bp Ori: OUP94833.1 Feature: domain Description: GDPD_like_2 Location: 115677-116334 bp Feature: domain Description: GDPD_like_2 Location: 115677-116334 bp Feature: gene Location: 117314-117691 bp Ori: OUP94834.1 Feature: domain Description: RVT_N Location: 117317-117542 bp Feature: domain Description: RVT_N Location: 117317-11754 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117596-117665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117596-117665 bp Feature: gene Location: 117669-117866 bp Ori: OUP94835.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117672-117864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117672-117864 bp Feature: gene Location: 117987-118262 bp Ori: OUP94836.1 Feature: domain Description: HTH_28 Location: 118011-118158 bp Feature: domain Description: HTH_28 Location: 118011-118158 bp Feature: gene Location: 118424-119527 bp Feature: domain Description: HTH_23 Location: 118448-118571 bp Feature: domain Description: HTH_23 Location: 1184 4 8-118571 bp Feature: domain Description: COG4584 Location: 118685-119273 bp Feature: domain Description: COG4 584 Location: 118685-119273 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SusD-like_3 (pfam14322), SusD_RagB (pfam07980), GDPD_like_2 (cd08582), RVT_N (pfam13655), RVT-GII, HTH_28 (pfam13518), HTH_23 (pfam13384), COG4584 (Transposase )

Seq: NFKW01000026.1 Bacteroides ovatus strain An161 An161_contig_26, whole genome shotgun sequence (100337 bp)
Overview 1 RT 1: 87730-92715 bp Neighborhood of RT #1 [87730, 92720] Bac_Flav_CT_G Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF3875 Feature: gene Location: 87730-87903 bp Ori: OUP93563.1 Feature: domain Description: Bac_Flav_CT_G Location: 87733-87889 bp Feature: domain Description: Bac_Flav_CT_G Location: 87733-87889 bp Feature: gene Location: 87910-88188 bp Ori: OUP93546.1 Feature: domain Description: Bac_Flav_CT_G Location: 87928-88186 bp Feature: domain Description: Bac_Flav_CT_G Location: 87928-88186 bp Feature: gene Location: 88266-90077 bp Ori: OUP93547.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88530-89352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 885 30-8935 2 bp Feature: domain Description: Intron_maturas2 Location: 89427-89742 bp Feature: domain Description: Intron_maturas2 Location: 89427-89742 bp Feature: domain Description: HNHc Note: nucleases Location: 89898-90048 bp Feature: domain Description: HNHc Note: nucleases Location: 89898-90048 bp Feature: gene Location: 90624-92531 bp Ori: OUP93548.1 Feature: domain Description: Bac_Flav_CT_G Location: 90627-92517 bp Feature: domain Description: Bac_Flav_CT_G Location: 90627-925 17 bp Feature: gene Location: 92550-92720 bp Ori: OUP93549.1 Feature: domain Description: DUF3875 Location: 92559-92715 bp Feature: domain Description: DUF3875 Location: 925 5 9-92715 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF3875 (pfam12991)

Seq: NFKW01000034.1 Bacteroides ovatus strain An161 An161_contig_34, whole genome shotgun sequence (72937 bp)
Overview 1 RT 1: 59637-71904 bp Neighborhood of RT #1 [59637, 72029] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons PDDEXK_2 Feature: gene Location: 59637-61439 bp Ori: OUP91737.1 Feature: domain Description: rpsA Location: 59706-61323 bp Feature: domain Description: rpsA Location: 59706 -6 1323 bp Feature: gene Location: 61536-67493 bp Ori: OUP91738.1 Feature: domain Description: DUF4011 Location: 62766-63279 bp Feature: domain Description: DUF4011 Location: 6 276 6 -6 3279 bp Feature: domain Description: DEXXQc_SF1 Location: 63618-64584 bp Feature: domain Description: DEXXQc_SF1 Location: 6 36 18-6 4584 bp Feature: domain Description: DEXXQc_SF1 Location: 65046-65805 bp Feature: domain Description: DEXXQc_SF1 Location: 6 5046 -6 5805 bp Feature: domain Description: TIGR00376 Location: 65937-66324 bp Feature: domain Description: TIGR00376 Location: 6 5937-6 6 324 bp Feature: domain Description: MTES_1575 Location: 66477-66762 bp Feature: domain Description: MTES_1575 Location: 6 6 477-6 6 76 2 bp Feature: domain Description: DUF3320 Location: 67002-67143 bp Feature: domain Description: DUF3320 Location: 6 7002-6 7143 bp Feature: gene Location: 67495-68625 bp Ori: OUP91739.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 67816-68359 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6 7816 -6 8359 bp Feature: gene Location: 68831-71038 bp Feature: gene Location: 71205-72029 bp Ori: OUP91741.1 Feature: domain Description: PDDEXK_2 Location: 71226-71904 bp Feature: domain Description: PDDEXK_2 Location: 71226 -71904 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, PDDEXK_2 (pfam12784)