myRT

myRT report for GCA_002160645.1_ASM216064v1

Download annotations/find similar RTs

Seq: NFKY01000001.1 [Clostridium] spiroforme strain An158 An158_contig_1, whole genome shotgun sequence (178509 bp)
Overview 1 RT 1: 146905-154065 bp Neighborhood of RT #1 [146905, 154070] Cmr6_III-B RVT-UNC cas1_HMARI Cas2_I_II_III Cas6 Feature: gene Location: 146905-147774 bp Ori: OUQ03983.1 Feature: domain Description: Cmr6_III-B Location: 147091-147754 bp Feature: domain Description: Cmr6_III-B Location: 1 47091 -1 47754 bp Feature: gene Location: 147767-149905 bp Feature: gene Location: 150692-152581 bp Ori: OUQ03985.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 150899-151460 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1 50899-1 51 460 bp Feature: domain Description: cas1_HMARI Location: 151598-152570 bp Feature: domain Description: cas1 _HMARI Location: 1 51 598-1 52570 bp Feature: gene Location: 152584-152844 bp Ori: OUQ03986.1 Feature: domain Description: Cas2_I_II_III Location: 152596-152818 bp Feature: domain Description: Cas2_I_II_III Location: 1 52596-1 5281 8 bp Feature: gene Location: 153336-154070 bp Ori: OUQ03987.1 Feature: domain Description: Cas6 Location: 153339-154065 bp Feature: domain Description: Cas6 Location: 1 53339-1 54065 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cmr6_III-B (cd09661), RVT-UG26/RVT-CRISPR/RVT-GII(RVT-UNC), cas1_HMARI (TIGR03641), Cas2_I_II_III (cl11442), Cas6 (pfam09559)

Seq: NFKY01000083.1 [Clostridium] spiroforme strain An158 An158_contig_83, whole genome shotgun sequence (3961 bp)
Overview 1 RT 1: 1645-3633 bp Neighborhood of RT #1 [1645, 3668] ParE_toxin RVT-GII Feature: gene Location: 1645-1950 bp Ori: OUP96870.1 Feature: domain Description: ParE_toxin Location: 1657-1933 bp Feature: domain Description: ParE_toxin Location: 1657-1933 bp Feature: gene Location: 2082-2289 bp Feature: gene Location: 2976-3668 bp Ori: OUP96871.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3159-3633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3159-3633 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParE_toxin (pfam05016), RVT-GII

Seq: NFKY01000008.1 [Clostridium] spiroforme strain An158 An158_contig_8, whole genome shotgun sequence (71966 bp)
Overview 1 RT 1: 64483-70590 bp Neighborhood of RT #1 [64483, 70649] Uup ABC_tran_CTD RVT-GII GIIM Phage_int_SAM_1 INT_RitC_C_like INT_RitB_C_like Feature: gene Location: 64483-66258 bp Ori: OUQ02986.1 Feature: domain Description: Uup Location: 64489-65941 bp Feature: domain Description: Uup Location: 64489-65941 bp Feature: domain Description: ABC_tran_CTD Location: 66025-66217 bp Feature: domain Description: ABC_tran_CTD Location: 66025-66217 bp Feature: gene Location: 66374-66652 bp Feature: gene Location: 67228-68526 bp Ori: OUQ02988.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67429-68047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67429-68047 bp Feature: domain Description: GIIM Note: maturase Location: 68101-68308 bp Feature: domain Description: GIIM Note: maturase Location: 68101-683 08 bp Feature: gene Location: 68677-69708 bp Ori: OUQ02989.1 Feature: domain Description: Phage_int_SAM_1 Location: 68725-68971 bp Feature: domain Description: Phage_int_SAM_1 Location: 68725-68971 bp Feature: domain Description: INT_RitC_C_like Location: 69067-69616 bp Feature: domain Description: INT_RitC_C_like Location: 69067-69616 bp Feature: gene Location: 69705-70649 bp Ori: OUQ02990.1 Feature: domain Description: INT_RitB_C_like Location: 70023-70590 bp Feature: domain Description: INT_RitB_C_like Location: 70023 -70590 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Uup (COG0488), ABC_tran_CTD (pfam16326), RVT-GII, GIIM (pfam08388), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), INT_RitB_C_like (cd00797)

Seq: NFKY01000062.1 [Clostridium] spiroforme strain An158 An158_contig_62, whole genome shotgun sequence (10138 bp)
Overview 1 RT 1: 4465-10119 bp Neighborhood of RT #1 [4465, 10138] NimA RVT-GII GIIM RVT-GII GIIM COG4584 rve PRK09183 Feature: gene Location: 4465-4974 bp Ori: OUP98389.1 Feature: domain Description: NimA Location: 4468-4927 bp Feature: domain Description: NimA Location: 4 4 68-4 927 bp Feature: gene Location: 5251-5439 bp Feature: gene Location: 5788-6345 bp Ori: OUP98391.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5791-5890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5791-5890 bp Feature: domain Description: GIIM Note: maturase Location: 5959-6166 bp Feature: domain Description: GIIM Note: maturase Location: 5959-6166 bp Feature: gene Location: 6464-7708 bp Ori: OUP98392.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6668-7325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6668-7325 bp Feature: domain Description: GIIM Note: maturase Location: 7406-7622 bp Feature: domain Description: GIIM Note: maturase Location: 74 06-7622 bp Feature: gene Location: 8138-9400 bp Ori: OUP98393.1 Feature: domain Description: COG4584 Location: 8225-8348 bp Feature: domain Description: COG4 584 Location: 8225-834 8 bp Feature: domain Description: rve Location: 8534-8921 bp Feature: domain Description: rve Location: 8534 -8921 bp Feature: gene Location: 9387-10138 bp Ori: OUP98394.1 Feature: domain Description: PRK09183 Location: 9408-10119 bp Feature: domain Description: PRK09183 Location: 94 08-10119 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NimA (COG3467), RVT-GII, GIIM (pfam08388), COG4584 (Transposase ), rve (pfam00665), PRK09183 (transposase/IS protein; Provisional)

Seq: NFKY01000054.1 [Clostridium] spiroforme strain An158 An158_contig_54, whole genome shotgun sequence (11128 bp)
Overview 1 RT 1: 7008-10791 bp Neighborhood of RT #1 [7008, 10952] SalY LolD RVT-GII GIIM Feature: gene Location: 7008-8432 bp Ori: OUP99124.1 Feature: domain Description: SalY Location: 7050-8421 bp Feature: domain Description: SalY Location: 705 0-8421 bp Feature: gene Location: 8434-9105 bp Ori: OUP99125.1 Feature: domain Description: LolD Location: 8449-9097 bp Feature: domain Description: LolD Location: 8449-9097 bp Feature: gene Location: 9534-10952 bp Ori: OUP99126.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9888-10503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9888-105 03 bp Feature: domain Description: GIIM Note: maturase Location: 10563-10791 bp Feature: domain Description: GIIM Note: maturase Location: 105 63-10791 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SalY (COG0577), LolD (COG1136), RVT-GII, GIIM (pfam08388)

Seq: NFKY01000052.1 [Clostridium] spiroforme strain An158 An158_contig_52, whole genome shotgun sequence (11904 bp)
Overview 1 RT 1: 333-11286 bp Neighborhood of RT #1 [333, 11286] dnaG RVT-UG19 HDc Feature: gene Location: 333-518 bp Feature: gene Location: 1053-2900 bp Ori: OUP99170.1 Feature: domain Description: dnaG Location: 1206-2301 bp Feature: domain Description: dnaG Location: 1206 -2301 bp Feature: gene Location: 2893-6513 bp Ori: OUP99171.1 Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 3271-3739 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 3271-3739 bp Feature: domain Description: HDc Location: 5443-5716 bp Feature: domain Description: HDc Location: 5443-5716 bp Feature: gene Location: 6682-10425 bp Feature: gene Location: 10666-11286 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), RVT-UG19, HDc (smart00471)

Seq: NFKY01000011.1 [Clostridium] spiroforme strain An158 An158_contig_11, whole genome shotgun sequence (68729 bp)
Overview 1 RT 1: 54952-67970 bp Neighborhood of RT #1 [54952, 67970] YloU YloV RVT-GII DUF4886 F5_F8_type_C F5_F8_type_C F5_F8_type_C Glyco_hydro_20b NAGidase F5_F8_type_C F5_F8_type_C F5_F8_type_C F5_F8_type_C Feature: gene Location: 54952-55308 bp Ori: OUQ02706.1 Feature: domain Description: YloU Location: 54958-55297 bp Feature: domain Description: YloU Location: 54958-55297 bp Feature: gene Location: 55321-56979 bp Ori: OUQ02707.1 Feature: domain Description: YloV Location: 55348-56977 bp Feature: domain Description: YloV Location: 55348-5697 7 bp Feature: gene Location: 57505-59245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57778-58567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57 7 7 8-58567 bp Feature: gene Location: 59924-67321 bp Ori: OUQ02708.1 Feature: domain Description: DUF4886 Location: 60056-60794 bp Feature: domain Description: DUF4886 Location: 60056-607 94 bp Feature: domain Description: F5_F8_type_C Location: 61262-61631 bp Feature: domain Description: F5_F8_type_C Location: 61262-61631 bp Feature: domain Description: F5_F8_type_C Location: 61877-62246 bp Feature: domain Description: F5_F8_type_C Location: 6187 7 -62246 bp Feature: domain Description: F5_F8_type_C Location: 62345-62711 bp Feature: domain Description: F5_F8_type_C Location: 62345-627 11 bp Feature: domain Description: Glyco_hydro_20b Location: 62975-63407 bp Feature: domain Description: Glyco_hydro_20b Location: 6297 5-63407 bp Feature: domain Description: NAGidase Location: 63425-64307 bp Feature: domain Description: NAGidase Location: 63425-64307 bp Feature: domain Description: F5_F8_type_C Location: 64892-65105 bp Feature: domain Description: F5_F8_type_C Location: 64892-65105 bp Feature: domain Description: F5_F8_type_C Location: 65192-65549 bp Feature: domain Description: F5_F8_type_C Location: 65192-65549 bp Feature: domain Description: F5_F8_type_C Location: 65627-65933 bp Feature: domain Description: F5_F8_type_C Location: 65627 -65933 bp Feature: domain Description: F5_F8_type_C Location: 66023-66392 bp Feature: domain Description: F5_F8_type_C Location: 66023-66392 bp Feature: gene Location: 67707-67970 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YloU (COG1302), YloV (TIGR03599), RVT-GII, DUF4886 (pfam16227), F5_F8_type_C (pfam00754), Glyco_hydro_20b (pfam02838), NAGidase (pfam07555)