myRT

myRT report for GCA_002160695.1_ASM216069v1

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Seq: NFLB01000008.1 [Clostridium] spiroforme strain An149 An149_contig_8, whole genome shotgun sequence (150588 bp)
Overview 1 RT 1: 45464-52074 bp 2 RT 2: 65962-70065 bp 3 RT 3: 146812-149969 bp Neighborhood of RT #1 [45464, 52076] LytT RfaL RVT-GII GIIM MdlB AlkD_like_1 Neighborhood of RT #2 [65962, 70124] Hydrolase_3 RVT-GII GIIM HMA FeoB_associated Neighborhood of RT #3 [146812, 150055] NimA RVT-GII GIIM RVT-GII GIIM Feature: gene Location: 45464-46267 bp Ori: OUQ04899.1 Feature: domain Description: LytT Location: 45524-46226 bp Feature: domain Description: LytT Location: 45524-46226 bp Feature: gene Location: 46271-47593 bp Ori: OUQ04900.1 Feature: domain Description: RfaL Location: 47159-47504 bp Feature: domain Description: RfaL Location: 471 59-47504 bp Feature: gene Location: 47667-49085 bp Ori: OUQ04901.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48021-48636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48021 -48636 bp Feature: domain Description: GIIM Note: maturase Location: 48696-48924 bp Feature: domain Description: GIIM Note: maturase Location: 48696-48924 bp Feature: gene Location: 49532-51265 bp Ori: OUQ04902.1 Feature: domain Description: MdlB Location: 49550-51254 bp Feature: domain Description: MdlB Location: 49550-51 254 bp Feature: gene Location: 51417-52076 bp Ori: OUQ04903.1 Feature: domain Description: AlkD_like_1 Location: 51462-52074 bp Feature: domain Description: AlkD_like_1 Location: 51 462-52074 bp Feature: gene Location: 65962-66330 bp Feature: gene Location: 66343-67176 bp Ori: OUQ04913.1 Feature: domain Description: Hydrolase_3 Location: 66361-67153 bp Feature: domain Description: Hydrolase_3 Location: 66361 -671 53 bp Feature: gene Location: 67322-68740 bp Ori: OUQ04914.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67676-68291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67676-68291 bp Feature: domain Description: GIIM Note: maturase Location: 68351-68579 bp Feature: domain Description: GIIM Note: maturase Location: 68351 -68579 bp Feature: gene Location: 69418-69777 bp Ori: OUQ04915.1 Feature: domain Description: HMA Location: 69580-69757 bp Feature: domain Description: HMA Location: 69580-69757 bp Feature: gene Location: 69933-70124 bp Ori: OUQ04916.1 Feature: domain Description: FeoB_associated Location: 69945-70065 bp Feature: domain Description: FeoB_associated Location: 69945-70065 bp Feature: gene Location: 146812-147321 bp Ori: OUQ04981.1 Feature: domain Description: NimA Location: 146815-147274 bp Feature: domain Description: NimA Location: 1 4681 5-1 47274 bp Feature: gene Location: 147598-147786 bp Feature: gene Location: 148135-148692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 148138-148237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 481 38-1 48237 bp Feature: domain Description: GIIM Note: maturase Location: 148306-148513 bp Feature: domain Description: GIIM Note: maturase Location: 1 48306-1 4851 3 bp Feature: gene Location: 148811-150055 bp Ori: OUQ04983.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 149015-149672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4901 5-1 49672 bp Feature: domain Description: GIIM Note: maturase Location: 149753-149969 bp Feature: domain Description: GIIM Note: maturase Location: 1 49753-1 49969 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LytT (COG3279), RfaL (COG3307), RVT-GII, GIIM (pfam08388), MdlB (COG1132), AlkD_like_1 (cd07064), Hydrolase_3 (pfam08282), HMA (pfam00403), FeoB_associated, NimA (COG3467)

Seq: NFLB01000011.1 [Clostridium] spiroforme strain An149 An149_contig_11, whole genome shotgun sequence (126609 bp)
Overview 1 RT 1: 51093-56167 bp Neighborhood of RT #1 [51093, 56208] COG3981 DUF3788 RVT-GII GIIM Uup ABC_tran_CTD Feature: gene Location: 51093-51503 bp Ori: OUQ04461.1 Feature: domain Description: COG3981 Location: 51129-51426 bp Feature: domain Description: COG3981 Location: 5112 9-5142 6 bp Feature: gene Location: 51608-52030 bp Ori: OUQ04462.1 Feature: domain Description: DUF3788 Location: 51638-52016 bp Feature: domain Description: DUF3788 Location: 51638-52 016 bp Feature: gene Location: 52165-53463 bp Ori: OUQ04463.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52366-52984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 366-52 984 bp Feature: domain Description: GIIM Note: maturase Location: 53038-53245 bp Feature: domain Description: GIIM Note: maturase Location: 53038-532 45 bp Feature: gene Location: 54039-54317 bp Feature: gene Location: 54433-56208 bp Ori: OUQ04465.1 Feature: domain Description: Uup Location: 54439-55891 bp Feature: domain Description: Uup Location: 54439-55891 bp Feature: domain Description: ABC_tran_CTD Location: 55975-56167 bp Feature: domain Description: ABC_tran_CTD Location: 55975-56167 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3981 (Predicted acetyltransferase ), DUF3788 (pfam12663), RVT-GII, GIIM (pfam08388), Uup (COG0488), ABC_tran_CTD (pfam16326)

Seq: NFLB01000024.1 [Clostridium] spiroforme strain An149 An149_contig_24, whole genome shotgun sequence (14610 bp)
Overview 1 RT 1: 11464-14610 bp Neighborhood of RT #1 [11464, 14610] INT_RitA_C_like FIVAR FIVAR FIVAR RVT-GII Feature: gene Location: 11464-12390 bp Ori: OUQ03010.1 Feature: domain Description: INT_RitA_C_like Location: 11839-12367 bp Feature: domain Description: INT_RitA_C_like Location: 1183 9-123 67 bp Feature: gene Location: 12506-13267 bp Feature: domain Description: FIVAR Location: 12515-12704 bp Feature: domain Description: FIVAR Location: 12515-12704 bp Feature: domain Description: FIVAR Location: 12722-12896 bp Feature: domain Description: FIVAR Location: 12722-12896 bp Feature: domain Description: FIVAR Location: 12923-13112 bp Feature: domain Description: FIVAR Location: 12923 -13 112 bp Feature: gene Location: 13782-14610 bp Ori: OUQ03011.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14136-14610 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1413 6-14610 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitA_C_like (cd01188), FIVAR (pfam07554), RVT-GII

Seq: NFLB01000001.1 [Clostridium] spiroforme strain An149 An149_contig_1, whole genome shotgun sequence (481776 bp)
Overview 1 RT 1: 17912-22988 bp Neighborhood of RT #1 [17912, 23014] TVP38 DDE_Tnp_1_4 RVT-GII GIIM TVP38 YdcF-like Feature: gene Location: 17912-18219 bp Feature: domain Description: TVP38 Location: 17918-18143 bp Feature: domain Description: TVP38 Location: 17918-1814 3 bp Feature: gene Location: 18397-19674 bp Ori: OUQ06370.1 Feature: domain Description: DDE_Tnp_1_4 Location: 18430-19669 bp Feature: domain Description: DDE_Tnp_1_4 Location: 184 30-19669 bp Feature: gene Location: 19826-21124 bp Ori: OUQ06371.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20027-20645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20027-2064 5 bp Feature: domain Description: GIIM Note: maturase Location: 20699-20906 bp Feature: domain Description: GIIM Note: maturase Location: 20699-20906 bp Feature: gene Location: 21751-22026 bp Ori: OUQ06372.1 Feature: domain Description: TVP38 Location: 21772-22015 bp Feature: domain Description: TVP38 Location: 21772-22015 bp Feature: gene Location: 22247-23014 bp Ori: OUQ06373.1 Feature: domain Description: YdcF-like Location: 22556-22988 bp Feature: domain Description: YdcF-like Location: 22556-22988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TVP38 (COG0398), DDE_Tnp_1_4 (pfam13701), RVT-GII, GIIM (pfam08388), YdcF-like (cl00630)

Seq: NFLB01000019.1 [Clostridium] spiroforme strain An149 An149_contig_19, whole genome shotgun sequence (33033 bp)
Overview 1 RT 1: 81-1994 bp 2 RT 2: 11322-22275 bp Neighborhood of RT #1 [81, 1994] RVT-GII GIIM TnpV Neighborhood of RT #2 [11322, 22275] dnaG RVT-UG19 HDc Feature: gene Location: 81-668 bp Ori: OUQ03481.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84-219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84-219 bp Feature: domain Description: GIIM Note: maturase Location: 279-510 bp Feature: domain Description: GIIM Note: maturase Location: 279-5 10 bp Feature: gene Location: 734-1117 bp Ori: OUQ03482.1 Feature: domain Description: TnpV Location: 773-1103 bp Feature: domain Description: TnpV Location: 773-1103 bp Feature: gene Location: 1725-1994 bp Feature: gene Location: 11322-11507 bp Feature: gene Location: 12042-13889 bp Ori: OUQ03491.1 Feature: domain Description: dnaG Location: 12195-13290 bp Feature: domain Description: dnaG Location: 12195 -13290 bp Feature: gene Location: 13882-17502 bp Ori: OUQ03492.1 Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 14260-14728 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 14260-14728 bp Feature: domain Description: HDc Location: 16432-16705 bp Feature: domain Description: HDc Location: 16432-16705 bp Feature: gene Location: 17671-21414 bp Feature: gene Location: 21655-22275 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), TnpV (pfam14198), dnaG (TIGR01391), RVT-UG19, HDc (smart00471)

Seq: NFLB01000006.1 [Clostridium] spiroforme strain An149 An149_contig_6, whole genome shotgun sequence (165046 bp)
Overview 1 RT 1: 30-2036 bp 2 RT 2: 14475-27482 bp Neighborhood of RT #1 [30, 2053] RVT-GII ParE_toxin Neighborhood of RT #2 [14475, 27493] DUF4886 F5_F8_type_C F5_F8_type_C F5_F8_type_C Glyco_hydro_20b NAGidase F5_F8_type_C F5_F8_type_C F5_F8_type_C F5_F8_type_C RVT-GII YloV YloU Feature: gene Location: 30-722 bp Ori: OUQ05362.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 213-687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 213-6 87 bp Feature: gene Location: 1409-1616 bp Feature: gene Location: 1748-2053 bp Ori: OUQ05213.1 Feature: domain Description: ParE_toxin Location: 1760-2036 bp Feature: domain Description: ParE_toxin Location: 176 0-2036 bp Feature: gene Location: 14475-14738 bp Feature: gene Location: 15124-22521 bp Ori: OUQ05227.1 Feature: domain Description: DUF4886 Location: 15256-15994 bp Feature: domain Description: DUF4886 Location: 15256 -15994 bp Feature: domain Description: F5_F8_type_C Location: 16462-16831 bp Feature: domain Description: F5_F8_type_C Location: 16 46 2-16 831 bp Feature: domain Description: F5_F8_type_C Location: 17077-17446 bp Feature: domain Description: F5_F8_type_C Location: 17077-17446 bp Feature: domain Description: F5_F8_type_C Location: 17545-17911 bp Feature: domain Description: F5_F8_type_C Location: 17545-17911 bp Feature: domain Description: Glyco_hydro_20b Location: 18175-18607 bp Feature: domain Description: Glyco_hydro_20b Location: 18175-186 07 bp Feature: domain Description: NAGidase Location: 18625-19507 bp Feature: domain Description: NAGidase Location: 186 25-19507 bp Feature: domain Description: F5_F8_type_C Location: 20092-20305 bp Feature: domain Description: F5_F8_type_C Location: 20092-20305 bp Feature: domain Description: F5_F8_type_C Location: 20392-20749 bp Feature: domain Description: F5_F8_type_C Location: 20392-20749 bp Feature: domain Description: F5_F8_type_C Location: 20827-21133 bp Feature: domain Description: F5_F8_type_C Location: 20827-21133 bp Feature: domain Description: F5_F8_type_C Location: 21223-21592 bp Feature: domain Description: F5_F8_type_C Location: 21223-21592 bp Feature: gene Location: 23200-24940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23473-24262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23473-2426 2 bp Feature: gene Location: 25466-27124 bp Ori: OUQ05228.1 Feature: domain Description: YloV Location: 25493-27122 bp Feature: domain Description: YloV Location: 25493-27122 bp Feature: gene Location: 27137-27493 bp Ori: OUQ05229.1 Feature: domain Description: YloU Location: 27143-27482 bp Feature: domain Description: YloU Location: 27143-27482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, ParE_toxin (pfam05016), DUF4886 (pfam16227), F5_F8_type_C (pfam00754), Glyco_hydro_20b (pfam02838), NAGidase (pfam07555), YloV (TIGR03599), YloU (COG1302)

Seq: NFLB01000007.1 [Clostridium] spiroforme strain An149 An149_contig_7, whole genome shotgun sequence (163961 bp)
Overview 1 RT 1: 148389-155930 bp Neighborhood of RT #1 [148389, 155935] InsA DDE_Tnp_IS1595 RVT-UNC Cas1_I-B Cas2_I_II_III Cas6 Feature: gene Location: 148389-150548 bp Feature: gene Location: 150873-151931 bp Ori: OUQ05159.1 Feature: domain Description: InsA Location: 151080-151359 bp Feature: domain Description: InsA Location: 151080-151359 bp Feature: domain Description: DDE_Tnp_IS1595 Location: 151371-151791 bp Feature: domain Description: DDE_Tnp_IS1595 Location: 15137 1-1517 91 bp Feature: gene Location: 152270-154159 bp Ori: OUQ05160.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 152477-153038 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 15247 7 -153038 bp Feature: domain Description: Cas1_I-B Location: 153176-154148 bp Feature: domain Description: Cas1_I-B Location: 15317 6-154148 bp Feature: gene Location: 154162-154422 bp Ori: OUQ05161.1 Feature: domain Description: Cas2_I_II_III Location: 154174-154396 bp Feature: domain Description: Cas2_I_II_III Location: 15417 4-154396 bp Feature: gene Location: 155201-155935 bp Ori: OUQ05162.1 Feature: domain Description: Cas6 Location: 155204-155930 bp Feature: domain Description: Cas6 Location: 155204-155930 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsA (COG3677), DDE_Tnp_IS1595 (pfam12762), RVT-UG26/RVT-CRISPR/RVT-GII(RVT-UNC), Cas1_I-B (cd09722), Cas2_I_II_III (cl11442), Cas6 (pfam09559)

Seq: NFLB01000013.1 [Clostridium] spiroforme strain An149 An149_contig_13, whole genome shotgun sequence (86846 bp)
Overview 1 RT 1: 36-5475 bp Neighborhood of RT #1 [36, 5510] RVT-GII GIIM GH25_LytC-like ChW ChW ChW ChW ChW BID_2 YjdB ChW ChW ChW ChW ChW ChW ChW ChW ChW FadM Feature: gene Location: 36-596 bp Ori: OUQ04266.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42-147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42-147 bp Feature: domain Description: GIIM Note: maturase Location: 207-438 bp Feature: domain Description: GIIM Note: maturase Location: 207-438 bp Feature: gene Location: 860-4741 bp Ori: OUQ04186.1 Feature: domain Description: GH25_LytC-like Location: 1196-1784 bp Feature: domain Description: GH25_LytC-like Location: 1196-178 4 bp Feature: domain Description: ChW Location: 1886-1976 bp Feature: domain Description: ChW Location: 18 8 6-1976 bp Feature: domain Description: ChW Location: 2147-2228 bp Feature: domain Description: ChW Location: 2147-2228 bp Feature: domain Description: ChW Location: 2291-2381 bp Feature: domain Description: ChW Location: 2291-238 1 bp Feature: domain Description: ChW Location: 2429-2534 bp Feature: domain Description: ChW Location: 2429-2534 bp Feature: domain Description: ChW Location: 2570-2678 bp Feature: domain Description: ChW Location: 2570-2678 bp Feature: domain Description: BID_2 Location: 2687-2897 bp Feature: domain Description: BID_2 Location: 268 7-28 97 bp Feature: domain Description: YjdB Location: 2927-3197 bp Feature: domain Description: YjdB Location: 2927-3197 bp Feature: domain Description: ChW Location: 3452-3554 bp Feature: domain Description: ChW Location: 3452-3554 bp Feature: domain Description: ChW Location: 3593-3695 bp Feature: domain Description: ChW Location: 3593-3695 bp Feature: domain Description: ChW Location: 3734-3833 bp Feature: domain Description: ChW Location: 3734-38 33 bp Feature: domain Description: ChW Location: 3905-4007 bp Feature: domain Description: ChW Location: 3905-4007 bp Feature: domain Description: ChW Location: 4043-4145 bp Feature: domain Description: ChW Location: 4043-4145 bp Feature: domain Description: ChW Location: 4184-4283 bp Feature: domain Description: ChW Location: 418 4-428 3 bp Feature: domain Description: ChW Location: 4355-4457 bp Feature: domain Description: ChW Location: 4355-4457 bp Feature: domain Description: ChW Location: 4493-4595 bp Feature: domain Description: ChW Location: 4493-4595 bp Feature: domain Description: ChW Location: 4634-4730 bp Feature: domain Description: ChW Location: 4634-4730 bp Feature: gene Location: 5097-5510 bp Ori: OUQ04187.1 Feature: domain Description: FadM Location: 5130-5475 bp Feature: domain Description: FadM Location: 5130-5475 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), GH25_LytC-like (cd06414), ChW (smart00728), BID_2 (smart00635), YjdB (COG5492), FadM (COG0824)