myRT

myRT report for GCA_002160975.1_ASM216097v1

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Seq: NFLP01000002.1 Lactobacillus gallinarum strain An119 An119_contig_2, whole genome shotgun sequence (149882 bp)
Overview 1 RT 1: 33935-37531 bp Neighborhood of RT #1 [33935, 37548] RVT-DGRs Phage_XkdX Feature: gene Location: 33935-34801 bp Feature: gene Location: 34915-35358 bp Feature: gene Location: 35643-36740 bp Ori: OUQ50584.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 35787-36489 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 35787-36489 bp Feature: gene Location: 36779-37387 bp Feature: gene Location: 37387-37548 bp Ori: OUQ50586.1 Feature: domain Description: Phage_XkdX Location: 37426-37531 bp Feature: domain Description: Phage_XkdX Location: 37426-37531 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_XkdX (pfam09693)

Seq: NFLP01000008.1 Lactobacillus gallinarum strain An119 An119_contig_8, whole genome shotgun sequence (74253 bp)
Overview 1 RT 1: 39466-45469 bp Neighborhood of RT #1 [39466, 45552] HIRAN PBP2_Lactococcal_OppA_like PBP2_Lactococcal_OppA_like RVT-GII GIIM SlpA SlpA SlpA SlpA DUF3883 Feature: gene Location: 39466-39912 bp Ori: OUQ49174.1 Feature: domain Description: HIRAN Location: 39622-39841 bp Feature: domain Description: HIRAN Location: 3962 2 -39841 bp Feature: gene Location: 39931-40524 bp Feature: domain Description: PBP2_Lactococcal_OppA_like Location: 39934-40081 bp Feature: domain Description: PBP2 _Lactococcal_OppA_like Location: 39934-40081 bp Feature: domain Description: PBP2_Lactococcal_OppA_like Location: 40243-40525 bp Feature: domain Description: PBP2 _Lactococcal_OppA_like Location: 402 43-4052 5 bp Feature: gene Location: 41077-42387 bp Ori: OUQ49175.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41278-41896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 412 78-41896 bp Feature: domain Description: GIIM Note: maturase Location: 41950-42163 bp Feature: domain Description: GIIM Note: maturase Location: 41950-42 163 bp Feature: gene Location: 42988-44169 bp Ori: OUQ49176.1 Feature: domain Description: SlpA Location: 43144-43237 bp Feature: domain Description: SlpA Location: 43144-432 37 bp Feature: domain Description: SlpA Location: 43381-43546 bp Feature: domain Description: SlpA Location: 43381-43546 bp Feature: domain Description: SlpA Location: 43585-43726 bp Feature: domain Description: SlpA Location: 43585-4372 6 bp Feature: domain Description: SlpA Location: 43900-44038 bp Feature: domain Description: SlpA Location: 43900-44038 bp Feature: gene Location: 44308-45552 bp Ori: OUQ49177.1 Feature: domain Description: DUF3883 Location: 45187-45469 bp Feature: domain Description: DUF3883 Location: 45187-45469 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HIRAN (smart00910), PBP2_Lactococcal_OppA_like (cd08510), RVT-GII, GIIM (pfam08388), SlpA (COG1047), DUF3883 (pfam13020)

Seq: NFLP01000040.1 Lactobacillus gallinarum strain An119 An119_contig_40, whole genome shotgun sequence (12764 bp)
Overview 1 RT 1: 4018-8468 bp Neighborhood of RT #1 [4018, 8468] HTH_TipAL-Mta RVT-UG2 Feature: gene Location: 4018-4260 bp Feature: domain Description: HTH_TipAL-Mta Location: 4033-4222 bp Feature: domain Description: HTH_TipAL-Mta Location: 403 3 -4222 bp Feature: gene Location: 4266-5312 bp Feature: gene Location: 5775-7112 bp Ori: OUQ45215.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 5985-6825 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 5985-6825 bp Feature: gene Location: 7233-8063 bp Feature: gene Location: 8238-8468 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_TipAL-Mta (cd01106), RVT-UG2