myRT

myRT report for GCA_002161065.1_ASM216106v1

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Seq: NFLV01000019.1 Eubacterium sp. An11 An11_contig_19, whole genome shotgun sequence (62151 bp)
Overview 1 RT 1: 16707-27990 bp 2 RT 2: 46962-52693 bp Neighborhood of RT #1 [16707, 27992] ORF6N KOG0390 KOG0390 RVT-GII Intron_maturas2 HNHc COG4646 Neighborhood of RT #2 [46962, 52827] Maff2 RVT-GII HNHc Maff2 VirD4 VirD4 Feature: gene Location: 16707-17675 bp Feature: domain Description: ORF6N Location: 16797-17070 bp Feature: domain Description: ORF6N Location: 1 6797-1 7070 bp Feature: gene Location: 17795-19420 bp Feature: domain Description: KOG0390 Location: 17804-17948 bp Feature: domain Description: KOG0390 Location: 1 7804-1 7948 bp Feature: domain Description: KOG0390 Location: 18278-18566 bp Feature: domain Description: KOG0390 Location: 1 8278-1 8566 bp Feature: gene Location: 19705-21519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19972-20788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9972-20788 bp Feature: domain Description: Intron_maturas2 Location: 20857-21187 bp Feature: domain Description: Intron_maturas2 Location: 20857-21 1 87 bp Feature: domain Description: HNHc Note: nucleases Location: 21337-21484 bp Feature: domain Description: HNHc Note: nucleases Location: 21 337-21 484 bp Feature: gene Location: 21482-21664 bp Feature: gene Location: 22107-27992 bp Feature: domain Description: COG4646 Location: 25848-27990 bp Feature: domain Description: COG4646 Location: 25848-27990 bp Feature: gene Location: 46962-47831 bp Feature: gene Location: 47843-47971 bp Feature: domain Description: Maff2 Location: 47876-47966 bp Feature: domain Description: Maff2 Location: 47876-47966 bp Feature: gene Location: 48090-49976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48423-49161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48423-491 61 bp Feature: domain Description: HNHc Note: nucleases Location: 49710-49860 bp Feature: domain Description: HNHc Note: nucleases Location: 4971 0-49860 bp Feature: gene Location: 50696-50827 bp Feature: domain Description: Maff2 Location: 50699-50825 bp Feature: domain Description: Maff2 Location: 50699-50825 bp Feature: gene Location: 50902-52827 bp Feature: domain Description: VirD4 Location: 51166-51523 bp Feature: domain Description: VirD4 Location: 51 1 66-51 523 bp Feature: domain Description: VirD4 Location: 51613-52693 bp Feature: domain Description: VirD4 Location: 51 61 3-52693 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ORF6N (pfam10543), KOG0390 (KOG0390, DNA repair protein, SNF2 family ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), COG4646 (Adenine-specific DNA methylase, N12 class ), Maff2 (pfam12750), VirD4 (COG3505)

Seq: NFLV01000002.1 Eubacterium sp. An11 An11_contig_2, whole genome shotgun sequence (291339 bp)
Overview 1 RT 1: 69-4414 bp Neighborhood of RT #1 [69, 4425] RVT-GII GIIM AAA_35 PrmA Feature: gene Location: 69-1352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 273-888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 73-888 bp Feature: domain Description: GIIM Note: maturase Location: 948-1179 bp Feature: domain Description: GIIM Note: maturase Location: 948-1179 bp Feature: gene Location: 2160-3332 bp Feature: domain Description: AAA_35 Location: 2241-3240 bp Feature: domain Description: AAA_35 Location: 2 2 41-32 40 bp Feature: gene Location: 3457-4425 bp Feature: domain Description: PrmA Location: 3463-4414 bp Feature: domain Description: PrmA Location: 3463-4414 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_35 (pfam14516), PrmA (pfam06325), RVT-GII, GIIM (pfam08388)

Seq: NFLV01000006.1 Eubacterium sp. An11 An11_contig_6, whole genome shotgun sequence (181857 bp)
Overview 1 RT 1: 139844-143637 bp Neighborhood of RT #1 [139844, 144119] UPF0242 RVT-DGRs Avd_like pfam03781 Feature: gene Location: 139844-140155 bp Feature: gene Location: 140305-140859 bp Feature: domain Description: UPF0242 Location: 140356-140656 bp Feature: domain Description: UPF0242 Location: 1403 56-140656 bp Feature: gene Location: 141068-142210 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 141275-141938 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 141275-14193 8 bp Feature: gene Location: 142555-142998 bp Feature: domain Description: Avd_like Location: 142609-142918 bp Feature: domain Description: Avd_like Location: 142609-142918 bp Feature: gene Location: 143067-144119 bp Feature: domain Description: pfam03781 Location: 143313-143637 bp Feature: domain Description: pfam03 781 Location: 143 3 13 -143 63 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UPF0242 (pfam06785), RVT-DGRs, Avd_like (cd16376), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1)

Seq: NFLV01000036.1 Eubacterium sp. An11 An11_contig_36, whole genome shotgun sequence (29532 bp)
Overview 1 RT 1: 497-4311 bp Neighborhood of RT #1 [497, 4311] HTH_16 HTH_26 RVT-GII GIIM Feature: gene Location: 497-685 bp Feature: domain Description: HTH_16 Location: 512-674 bp Feature: domain Description: HTH_16 Location: 512-674 bp Feature: gene Location: 1069-1338 bp Feature: domain Description: HTH_26 Location: 1072-1219 bp Feature: domain Description: HTH_26 Location: 1072-1219 bp Feature: gene Location: 1984-3300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2245-2938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 224 5-2938 bp Feature: domain Description: GIIM Note: maturase Location: 3007-3211 bp Feature: domain Description: GIIM Note: maturase Location: 3007-3211 bp Feature: gene Location: 3484-3729 bp Feature: gene Location: 3730-4311 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_26 (pfam13443), RVT-GII, GIIM (pfam08388), HTH_16 (pfam12645)