myRT

myRT report for GCA_002161115.1_ASM216111v1

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Seq: NFLW01000023.1 Bacteroides xylanisolvens strain An109 An109_contig_23, whole genome shotgun sequence (90789 bp)
Overview 1 RT 1: 27381-30883 bp Neighborhood of RT #1 [27381, 30912] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 27381-27668 bp Feature: gene Location: 27872-28150 bp Feature: gene Location: 28113-29534 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 28488-29190 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 28488-291 90 bp Feature: gene Location: 29549-29956 bp Feature: domain Description: Avd_like Location: 29582-29891 bp Feature: domain Description: Avd_like Location: 29582-29891 bp Feature: gene Location: 30103-30912 bp Feature: domain Description: DUF1566 Location: 30634-30883 bp Feature: domain Description: DUF1 566 Location: 30634-30883 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: NFLW01000035.1 Bacteroides xylanisolvens strain An109 An109_contig_35, whole genome shotgun sequence (65954 bp)
Overview 1 RT 1: 739-13119 bp Neighborhood of RT #1 [739, 13250] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 KOG1803 MTES_1575 DUF3320 rpsA Feature: gene Location: 739-1563 bp Feature: domain Description: PDDEXK_2 Location: 760-1438 bp Feature: domain Description: PDDEXK_2 Location: 760-1438 bp Feature: gene Location: 1732-3939 bp Feature: gene Location: 4147-5277 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4468-5011 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4468-5011 bp Feature: gene Location: 5328-11354 bp Feature: domain Description: DUF4011 Location: 6558-7071 bp Feature: domain Description: DUF4011 Location: 6558-7071 bp Feature: domain Description: DEXXQc_SF1 Location: 7410-7839 bp Feature: domain Description: DEXXQc_SF1 Location: 7410-7839 bp Feature: domain Description: DEXXQc_SF1 Location: 8838-9597 bp Feature: domain Description: DEXXQc_SF1 Location: 8838-9597 bp Feature: domain Description: KOG1803 Location: 9732-10110 bp Feature: domain Description: KOG1803 Location: 9732 -10110 bp Feature: domain Description: MTES_1575 Location: 10269-10554 bp Feature: domain Description: MTES_1575 Location: 102 69-10554 bp Feature: domain Description: DUF3320 Location: 10869-11004 bp Feature: domain Description: DUF332 0 Location: 10869-11004 bp Feature: gene Location: 11451-13250 bp Feature: domain Description: rpsA Location: 11520-13119 bp Feature: domain Description: rpsA Location: 1152 0-13119 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), KOG1803 (KOG1803, DNA helicase ), MTES_1575 (pfam18741), DUF3320 (pfam11784), PDDEXK_2 (pfam12784)

Seq: NFLW01000040.1 Bacteroides xylanisolvens strain An109 An109_contig_40, whole genome shotgun sequence (54283 bp)
Overview 1 RT 1: 21413-27460 bp Neighborhood of RT #1 [21413, 28116] NGN_SP_UpxY KOW_NusG Phage_int_SAM_5 INTN1_C_like RVT-Retrons REC Feature: gene Location: 21413-21991 bp Feature: domain Description: NGN_SP_UpxY Location: 21491-21773 bp Feature: domain Description: NGN_SP_UpxY Location: 21491-21773 bp Feature: domain Description: KOW_NusG Location: 21824-21935 bp Feature: domain Description: KOW_NusG Location: 21824-2193 5 bp Feature: gene Location: 22327-23292 bp Feature: domain Description: Phage_int_SAM_5 Location: 22360-22603 bp Feature: domain Description: Phage_int_SAM_5 Location: 223 60-22603 bp Feature: domain Description: INTN1_C_like Location: 22684-23206 bp Feature: domain Description: INTN1_C_like Location: 22684-23 206 bp Feature: gene Location: 23569-25788 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23770-24355 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23 770-243 55 bp Feature: gene Location: 25766-26410 bp Feature: gene Location: 26407-28116 bp Feature: domain Description: REC Location: 27229-27460 bp Feature: domain Description: REC Location: 27229-27460 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NGN_SP_UpxY (cd09895), KOW_NusG (cd06091), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-Retrons, REC (smart00448)