myRT

myRT report for GCA_002161135.1_ASM216113v1

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Seq: NFLX01000008.1 Bacteroides xylanisolvens strain An107 An107_contig_8, whole genome shotgun sequence (165871 bp)
Overview 1 RT 1: 105803-109391 bp Neighborhood of RT #1 [105803, 109391] SSB_OBF RVT_N RVT-GII GIIM Feature: gene Location: 105803-106189 bp Feature: domain Description: SSB_OBF Location: 105827-106115 bp Feature: domain Description: SSB_OBF Location: 1 05827-1 061 1 5 bp Feature: gene Location: 106226-106411 bp Feature: gene Location: 106973-108475 bp Feature: RT Description: RVT_N Location: 107039-107282 bp Feature: RT Description: RVT_N Location: 1 07039-1 07282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107327-107969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 07327-1 07969 bp Feature: domain Description: GIIM Note: maturase Location: 108026-108257 bp Feature: domain Description: GIIM Note: maturase Location: 1 08026-1 08257 bp Feature: gene Location: 108561-108791 bp Feature: gene Location: 109209-109391 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SSB_OBF (cd04496), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: NFLX01000026.1 Bacteroides xylanisolvens strain An107 An107_contig_26, whole genome shotgun sequence (91177 bp)
Overview 1 RT 1: 7495-15795 bp Neighborhood of RT #1 [7495, 15872] SMC_prok_B Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Bac_Flav_CT_G DUF4133 Feature: gene Location: 7495-10005 bp Feature: domain Description: SMC_prok_B Location: 9013-9325 bp Feature: domain Description: SMC_prok_B Location: 9013-932 5 bp Feature: gene Location: 10256-10801 bp Feature: domain Description: Bac_Flav_CT_G Location: 10274-10688 bp Feature: domain Description: Bac_Flav_CT_G Location: 102 74-10688 bp Feature: gene Location: 10879-12690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11143-11965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11143-11965 bp Feature: domain Description: Intron_maturas2 Location: 12040-12355 bp Feature: domain Description: Intron_maturas2 Location: 12 040-12 355 bp Feature: domain Description: HNHc Note: nucleases Location: 12511-12661 bp Feature: domain Description: HNHc Note: nucleases Location: 12 511-12 661 bp Feature: gene Location: 13237-15450 bp Feature: domain Description: Bac_Flav_CT_G Location: 13387-14896 bp Feature: domain Description: Bac_Flav_CT_G Location: 13387-14896 bp Feature: domain Description: Bac_Flav_CT_G Location: 14968-15436 bp Feature: domain Description: Bac_Flav_CT_G Location: 14968-15436 bp Feature: gene Location: 15573-15872 bp Feature: domain Description: DUF4133 Location: 15615-15795 bp Feature: domain Description: DUF4133 Location: 15615-15795 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571)

Seq: NFLX01000019.1 Bacteroides xylanisolvens strain An107 An107_contig_19, whole genome shotgun sequence (107734 bp)
Overview 1 RT 1: 74781-80824 bp Neighborhood of RT #1 [74781, 81477] NGN_SP_UpxY KOW_NusG Phage_int_SAM_5 INTN1_C_like RVT-Retrons REC Feature: gene Location: 74781-75359 bp Feature: domain Description: NGN_SP_UpxY Location: 74859-75141 bp Feature: domain Description: NGN_SP_UpxY Location: 74859-75141 bp Feature: domain Description: KOW_NusG Location: 75192-75303 bp Feature: domain Description: KOW_NusG Location: 75192-753 03 bp Feature: gene Location: 75695-76660 bp Feature: domain Description: Phage_int_SAM_5 Location: 75728-75971 bp Feature: domain Description: Phage_int_SAM_5 Location: 75728-75971 bp Feature: domain Description: INTN1_C_like Location: 76052-76574 bp Feature: domain Description: INTN1_C_like Location: 76052-76574 bp Feature: gene Location: 76936-79155 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 77137-77722 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7713 7-77722 bp Feature: gene Location: 79133-79777 bp Feature: gene Location: 79774-81477 bp Feature: domain Description: REC Location: 80593-80824 bp Feature: domain Description: REC Location: 80593 -80824 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NGN_SP_UpxY (cd09895), KOW_NusG (cd06091), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-Retrons, REC (smart00448)

Seq: NFLX01000012.1 Bacteroides xylanisolvens strain An107 An107_contig_12, whole genome shotgun sequence (149616 bp)
Overview 1 RT 1: 91388-103768 bp Neighborhood of RT #1 [91388, 103899] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 91388-92212 bp Feature: domain Description: PDDEXK_2 Location: 91409-92087 bp Feature: domain Description: PDDEXK_2 Location: 914 09-92087 bp Feature: gene Location: 92381-94588 bp Feature: gene Location: 94796-95926 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 95117-95660 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 95117-95660 bp Feature: gene Location: 95977-102003 bp Feature: domain Description: DUF4011 Location: 97207-97720 bp Feature: domain Description: DUF4 011 Location: 97207-97720 bp Feature: domain Description: DEXXQc_SF1 Location: 98059-98488 bp Feature: domain Description: DEXXQc_SF1 Location: 98059-984 88 bp Feature: domain Description: DEXXQc_SF1 Location: 99487-100246 bp Feature: domain Description: DEXXQc_SF1 Location: 994 87-10024 6 bp Feature: domain Description: TIGR00376 Location: 100375-100765 bp Feature: domain Description: TIGR00376 Location: 100375-100765 bp Feature: domain Description: MTES_1575 Location: 100918-101203 bp Feature: domain Description: MTES_1575 Location: 100918-101203 bp Feature: domain Description: DUF3320 Location: 101518-101653 bp Feature: domain Description: DUF3320 Location: 101518-101653 bp Feature: gene Location: 102100-103899 bp Feature: domain Description: rpsA Location: 102169-103768 bp Feature: domain Description: rpsA Location: 102169-103768 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784)