myRT

myRT report for GCA_002161165.1_ASM216116v1

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Seq: NFLZ01000009.1 Lactobacillus gallinarum strain An101 An101_contig_9, whole genome shotgun sequence (59870 bp)
Overview 1 RT 1: 47475-53131 bp Neighborhood of RT #1 [47475, 53131] ThrE_2 DEDD_Tnp_IS110 Transposase_20 RVT-GII GIIM YvpB Feature: gene Location: 47475-47960 bp Ori: OUQ76497.1 Feature: domain Description: ThrE_2 Location: 47508-47886 bp Feature: domain Description: ThrE_2 Location: 47508-47886 bp Feature: gene Location: 48356-49585 bp Ori: OUQ76512.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 48383-48839 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 48383-48839 bp Feature: domain Description: Transposase_20 Location: 49178-49385 bp Feature: domain Description: Transposase_20 Location: 491 78-49385 bp Feature: gene Location: 50398-51708 bp Ori: OUQ76498.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50599-51217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50599-51 21 7 bp Feature: domain Description: GIIM Note: maturase Location: 51271-51484 bp Feature: domain Description: GIIM Note: maturase Location: 51 271 -51 484 bp Feature: gene Location: 51771-52490 bp Ori: OUQ76499.1 Feature: domain Description: YvpB Location: 51903-52470 bp Feature: domain Description: YvpB Location: 51 903-52470 bp Feature: gene Location: 52595-53131 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ThrE_2 (pfam12821), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), RVT-GII, GIIM (pfam08388), YvpB (COG4990)

Seq: NFLZ01000022.1 Lactobacillus gallinarum strain An101 An101_contig_22, whole genome shotgun sequence (30841 bp)
Overview 1 RT 1: 1045-5946 bp Neighborhood of RT #1 [1045, 5963] RVT-AbiA HEPN_AbiA_CTD RmlD_sub_bind dTDP_sugar_isom Feature: gene Location: 1045-1359 bp Feature: gene Location: 1375-2205 bp Feature: gene Location: 2239-4194 bp Ori: OUQ75127.1 Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 2608-3106 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 2 608-3106 bp Feature: domain Description: HEPN_AbiA_CTD Location: 3748-4159 bp Feature: domain Description: HEPN_AbiA_CTD Location: 3748-4159 bp Feature: gene Location: 4348-5334 bp Ori: OUQ75128.1 Feature: domain Description: RmlD_sub_bind Location: 4351-5296 bp Feature: domain Description: RmlD_sub_bind Location: 4351-52 96 bp Feature: gene Location: 5355-5963 bp Ori: OUQ75129.1 Feature: domain Description: dTDP_sugar_isom Location: 5394-5946 bp Feature: domain Description: dTDP_sugar_isom Location: 5394-5946 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiA, HEPN_AbiA_CTD (pfam18732), RmlD_sub_bind (pfam04321), dTDP_sugar_isom (pfam00908)

Seq: NFLZ01000017.1 Lactobacillus gallinarum strain An101 An101_contig_17, whole genome shotgun sequence (41150 bp)
Overview 1 RT 1: 2470-6085 bp Neighborhood of RT #1 [2470, 6085] Phage_XkdX RVT-DGRs Avd_like Feature: gene Location: 2470-2664 bp Ori: OUQ75482.1 Feature: domain Description: Phage_XkdX Location: 2536-2638 bp Feature: domain Description: Phage_XkdX Location: 253 6-263 8 bp Feature: gene Location: 2664-3245 bp Feature: gene Location: 3276-4421 bp Ori: OUQ75484.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3462-4176 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 462-4176 bp Feature: gene Location: 4683-5117 bp Ori: OUQ75485.1 Feature: domain Description: Avd_like Location: 4842-5091 bp Feature: domain Description: Avd_like Location: 4842-5091 bp Feature: gene Location: 5222-6085 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_XkdX (pfam09693), RVT-DGRs, Avd_like (cd16376)