myRT

myRT report for GCA_002161215.1_ASM216121v1

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Seq: NFMB01000007.1 Flavonifractor sp. An10 An10_contig_7, whole genome shotgun sequence (265029 bp)
Overview 1 RT 1: 54632-59748 bp Neighborhood of RT #1 [54632, 59777] Intron_maturas2 Avd_like RVT-DGRs Flg_new Flg_new SLH SLH SLH SLH SLH SLH Feature: gene Location: 54632-55004 bp Feature: domain Description: Intron_maturas2 Location: 54773-54926 bp Feature: domain Description: Intron_maturas2 Location: 54773-54926 bp Feature: gene Location: 55067-55273 bp Ori: OUQ80807.1 Feature: domain Description: Avd_like Location: 55073-55256 bp Feature: domain Description: Avd_like Location: 55073-55256 bp Feature: gene Location: 55299-55826 bp Ori: OUQ80808.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 55302-55554 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 55302-55554 bp Feature: gene Location: 55727-58768 bp Ori: OUQ80809.1 Feature: domain Description: Flg_new Location: 57734-57938 bp Feature: domain Description: Flg_new Location: 57734-57938 bp Feature: domain Description: Flg_new Location: 57992-58181 bp Feature: domain Description: Flg_new Location: 57992-581 81 bp Feature: domain Description: SLH Location: 58229-58349 bp Feature: domain Description: SLH Location: 58229-58349 bp Feature: domain Description: SLH Location: 58409-58538 bp Feature: domain Description: SLH Location: 58409-58538 bp Feature: domain Description: SLH Location: 58604-58736 bp Feature: domain Description: SLH Location: 58604-58736 bp Feature: gene Location: 59223-59777 bp Ori: OUQ80810.1 Feature: domain Description: SLH Location: 59310-59376 bp Feature: domain Description: SLH Location: 5931 0-59376 bp Feature: domain Description: SLH Location: 59436-59562 bp Feature: domain Description: SLH Location: 59436-59562 bp Feature: domain Description: SLH Location: 59619-59748 bp Feature: domain Description: SLH Location: 5961 9-59748 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Intron_maturas2 (pfam01348), Avd_like (cd16376), RVT-DGRs, Flg_new (pfam09479), SLH (pfam00395)

Seq: NFMB01000001.1 Flavonifractor sp. An10 An10_contig_1, whole genome shotgun sequence (535123 bp)
Overview 1 RT 1: 205758-211968 bp Neighborhood of RT #1 [205758, 212081] VirD4 RVT-GII VirD4 RpsA Feature: gene Location: 205758-206708 bp Ori: OUQ84450.1 Feature: domain Description: VirD4 Location: 206022-206676 bp Feature: domain Description: VirD4 Location: 2 0602 2 -2 06676 bp Feature: gene Location: 206998-207206 bp Feature: gene Location: 207355-209262 bp Ori: OUQ84451.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 207688-208432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 07688-2 08432 bp Feature: gene Location: 209398-210567 bp Feature: domain Description: VirD4 Location: 209407-210448 bp Feature: domain Description: VirD4 Location: 2 09407-2 10448 bp Feature: gene Location: 210615-212081 bp Ori: OUQ84452.1 Feature: domain Description: RpsA Location: 211467-211968 bp Feature: domain Description: RpsA Location: 2 11467-2 11968 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirD4 (COG3505), RVT-GII, RpsA (COG0539)

Seq: NFMB01000002.1 Flavonifractor sp. An10 An10_contig_2, whole genome shotgun sequence (524198 bp)
Overview 1 RT 1: 150719-157806 bp Neighborhood of RT #1 [150719, 157922] COG0610 DUF45 RVT-AbiA HEPN_AbiA_CTD HipB HTH_17 Feature: gene Location: 150719-153811 bp Ori: OUQ83741.1 Feature: domain Description: COG0610 Location: 150740-153680 bp Feature: domain Description: COG0610 Location: 150740-153 680 bp Feature: gene Location: 153811-154518 bp Ori: OUQ83742.1 Feature: domain Description: DUF45 Location: 153868-154492 bp Feature: domain Description: DUF45 Location: 153 868-154492 bp Feature: gene Location: 154584-156464 bp Ori: OUQ83743.1 Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 154938-155463 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 15493 8-155463 bp Feature: domain Description: HEPN_AbiA_CTD Location: 156060-156450 bp Feature: domain Description: HEPN_AbiA_CTD Location: 156060-156450 bp Feature: gene Location: 156927-157415 bp Ori: OUQ83744.1 Feature: domain Description: HipB Location: 156936-157314 bp Feature: domain Description: HipB Location: 15693 6-1573 14 bp Feature: gene Location: 157719-157922 bp Ori: OUQ83745.1 Feature: domain Description: HTH_17 Location: 157737-157806 bp Feature: domain Description: HTH_17 Location: 15773 7-157806 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), DUF45 (pfam01863), RVT-AbiA, HEPN_AbiA_CTD (pfam18732), HipB (COG1396), HTH_17 (pfam12728)

Seq: NFMB01000004.1 Flavonifractor sp. An10 An10_contig_4, whole genome shotgun sequence (467191 bp)
Overview 1 RT 1: 337959-343423 bp Neighborhood of RT #1 [337959, 343423] VirD4 HNHc RVT-GII RVT-GII DUF4096 Feature: gene Location: 337959-339362 bp Ori: OUQ82810.1 Feature: domain Description: VirD4 Location: 338025-339357 bp Feature: domain Description: VirD4 Location: 338025-339357 bp Feature: gene Location: 339429-340091 bp Ori: OUQ82811.1 Feature: domain Description: HNHc Note: nucleases Location: 339852-339969 bp Feature: domain Description: HNHc Note: nucleases Location: 339852-339969 bp Feature: gene Location: 340108-340629 bp Ori: OUQ82812.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 340111-340492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 0111-34 04 92 bp Feature: gene Location: 340613-340814 bp Feature: gene Location: 340839-341303 bp Ori: OUQ82813.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 341034-341301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 1034 -34 1301 bp Feature: gene Location: 341443-342202 bp Feature: domain Description: DUF4096 Location: 341461-341683 bp Feature: domain Description: DUF4 096 Location: 34 14 61-34 1683 bp Feature: gene Location: 343154-343423 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirD4 (COG3505), HNHc (smart00507), RVT-GII, DUF4096 (pfam13340)