myRT

myRT report for GCA_002161515.1_ASM216151v1

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Seq: NFHX01000056.1 Faecalibacterium sp. An58 An58_contig_56, whole genome shotgun sequence (2945 bp)
Overview 1 RT 1: 361-2910 bp Neighborhood of RT #1 [361, 2945] Ape1-like_AP-endo RVT_N RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 361-726 bp Feature: gene Location: 774-1130 bp Feature: domain Description: Ape1-like_AP-endo Location: 867-1119 bp Feature: domain Description: Ape1 -like_AP-endo Location: 867-1 1 1 9 bp Feature: gene Location: 1127-2284 bp Feature: RT Description: RVT_N Location: 1175-1412 bp Feature: RT Description: RVT_N Location: 1 1 75-1 41 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1463-2093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 463-2093 bp Feature: domain Description: GIIM Note: maturase Location: 2156-2276 bp Feature: domain Description: GIIM Note: maturase Location: 21 56-2276 bp Feature: gene Location: 2340-2945 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2352-2766 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2352-2766 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2787-2910 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2787-291 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), Ape1-like_AP-endo (cd09087)

Seq: NFHX01000042.1 Faecalibacterium sp. An58 An58_contig_42, whole genome shotgun sequence (13596 bp)
Overview 1 RT 1: 1081-5336 bp Neighborhood of RT #1 [1081, 5437] Maff2 RVT-GII Intron_maturas2 HNHc PrgI Feature: gene Location: 1081-1296 bp Feature: domain Description: Maff2 Location: 1084-1291 bp Feature: domain Description: Maff2 Location: 1084-12 91 bp Feature: gene Location: 1560-2228 bp Feature: gene Location: 2804-4636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3068-3899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3068-3899 bp Feature: domain Description: Intron_maturas2 Location: 3971-4313 bp Feature: domain Description: Intron_maturas2 Location: 3971-4313 bp Feature: domain Description: HNHc Note: nucleases Location: 4454-4607 bp Feature: domain Description: HNHc Note: nucleases Location: 4454-4607 bp Feature: gene Location: 4712-5014 bp Feature: gene Location: 5045-5437 bp Feature: domain Description: PrgI Location: 5066-5336 bp Feature: domain Description: PrgI Location: 5066-5336 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Maff2 (pfam12750), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PrgI (pfam12666)

Seq: NFHX01000001.1 Faecalibacterium sp. An58 An58_contig_1, whole genome shotgun sequence (449555 bp)
Overview 1 RT 1: 10515-14379 bp 2 RT 2: 338297-345097 bp Neighborhood of RT #1 [10515, 14483] SCP-1 FN3 FN3 RVT-DGRs Avd_like Neighborhood of RT #2 [338297, 345114] PrgI VirB4_CagE TraC-F-type RVT_N RVT-GII GIIM TraC-F-type Spr Feature: gene Location: 10515-10694 bp Feature: domain Description: SCP-1 Location: 10545-10647 bp Feature: domain Description: SCP-1 Location: 10545-10647 bp Feature: gene Location: 10694-12502 bp Feature: domain Description: FN3 Location: 11321-11597 bp Feature: domain Description: FN3 Location: 113 21-11597 bp Feature: domain Description: FN3 Location: 11615-11882 bp Feature: domain Description: FN3 Location: 11615-11882 bp Feature: gene Location: 12502-13554 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12724-13321 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12724-13 3 21 bp Feature: gene Location: 13663-13941 bp Feature: gene Location: 13935-14483 bp Feature: domain Description: Avd_like Location: 14106-14379 bp Feature: domain Description: Avd_like Location: 14106-143 79 bp Feature: gene Location: 338297-338683 bp Feature: domain Description: PrgI Location: 338318-338588 bp Feature: domain Description: PrgI Location: 3 3 83 18-3 3 8588 bp Feature: gene Location: 338646-340136 bp Feature: domain Description: VirB4_CagE Location: 338760-339192 bp Feature: domain Description: VirB4_CagE Location: 3 3 8760-3 3 9192 bp Feature: domain Description: TraC-F-type Location: 339432-340086 bp Feature: domain Description: TraC-F-type Location: 3 3 943 2-3 40086 bp Feature: gene Location: 340687-342369 bp Feature: RT Description: RVT_N Location: 340765-341008 bp Feature: RT Description: RVT_N Location: 3 40765-3 41008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 341053-341716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 41053 -3 41716 bp Feature: domain Description: GIIM Note: maturase Location: 341767-342004 bp Feature: domain Description: GIIM Note: maturase Location: 3 41767-3 42004 bp Feature: gene Location: 342444-343376 bp Feature: domain Description: TraC-F-type Location: 342459-343185 bp Feature: domain Description: TraC-F-type Location: 3 42459-3 43 185 bp Feature: gene Location: 343369-345114 bp Feature: domain Description: Spr Location: 344755-345097 bp Feature: domain Description: Spr Location: 3 44755-3 45097 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SCP-1 (pfam05483), FN3 (smart00060), RVT-DGRs, Avd_like (cd16376), PrgI (pfam12666), VirB4_CagE (TIGR00929), TraC-F-type (TIGR02746), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)
Spr (COG0791)