myRT

myRT report for GCA_002161565.1_ASM216156v1

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Seq: NFIC01000001.1 Bacteroides sp. An51A An51A_contig_1, whole genome shotgun sequence (919987 bp)
Overview 1 RT 1: 738628-751173 bp Neighborhood of RT #1 [738628, 751250] PRK09289 ebgA RVT-GII GIIM RVT-GII GIIM Virul_fac_BrkB degP_htrA_DO Feature: gene Location: 738628-739233 bp Ori: OUN82536.1 Feature: domain Description: PRK09289 Location: 738631-739222 bp Feature: domain Description: PRK09289 Location: 738631 -739222 bp Feature: gene Location: 739345-742434 bp Ori: OUN82537.1 Feature: domain Description: ebgA Location: 739414-742417 bp Feature: domain Description: ebgA Location: 73941 4-74241 7 bp Feature: gene Location: 742549-743955 bp Ori: OUN82538.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742891-743509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742891 -743509 bp Feature: domain Description: GIIM Note: maturase Location: 743566-743773 bp Feature: domain Description: GIIM Note: maturase Location: 743566-743773 bp Feature: gene Location: 744863-745062 bp Feature: gene Location: 745155-746561 bp Ori: OUN82539.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 745497-746115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 745497-7461 1 5 bp Feature: domain Description: GIIM Note: maturase Location: 746172-746379 bp Feature: domain Description: GIIM Note: maturase Location: 7461 72-746379 bp Feature: gene Location: 747714-749018 bp Ori: OUN82540.1 Feature: domain Description: Virul_fac_BrkB Location: 747849-748590 bp Feature: domain Description: Virul_fac_BrkB Location: 747849-748590 bp Feature: gene Location: 749754-751250 bp Ori: OUN82541.1 Feature: domain Description: degP_htrA_DO Location: 749946-751173 bp Feature: domain Description: degP_htrA_DO Location: 749946-751 1 73 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09289 (riboflavin synthase), ebgA (PRK10340), RVT-GII, GIIM (pfam08388), Virul_fac_BrkB (pfam03631), degP_htrA_DO (TIGR02037)

Seq: NFIC01000006.1 Bacteroides sp. An51A An51A_contig_6, whole genome shotgun sequence (370904 bp)
Overview 1 RT 1: 184343-198007 bp Neighborhood of RT #1 [184343, 198072] dnaG RVT-UG24 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like HTH_17 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-GII GIIM Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like DUF1016_N DUF1016_N YhcG_C Feature: gene Location: 184343-185377 bp Ori: OUN79735.1 Feature: domain Description: dnaG Location: 184430-185333 bp Feature: domain Description: dnaG Location: 184430-185333 bp Feature: gene Location: 185384-186124 bp Feature: gene Location: 186126-189563 bp Ori: OUN79737.1 Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 186636-187095 bp Feature: RT Description: RVT-UG2 4 Note: UG2 4 RT Location: 186636-187095 bp Feature: gene Location: 190011-191207 bp Ori: OUN79738.1 Feature: domain Description: Arm-DNA-bind_5 Location: 190044-190257 bp Feature: domain Description: Arm-DNA-bind_5 Location: 190044-1902 57 bp Feature: domain Description: Phage_int_SAM_5 Location: 190398-190632 bp Feature: domain Description: Phage_int_SAM_5 Location: 190398-190632 bp Feature: domain Description: INTN1_C_like Location: 190698-191202 bp Feature: domain Description: INTN1_C_like Location: 190698-1912 02 bp Feature: gene Location: 191468-191746 bp Ori: OUN79739.1 Feature: domain Description: HTH_17 Location: 191588-191735 bp Feature: domain Description: HTH_17 Location: 191588-191735 bp Feature: gene Location: 191844-193079 bp Ori: OUN79740.1 Feature: domain Description: Arm-DNA-bind_5 Location: 191874-192111 bp Feature: domain Description: Arm-DNA-bind_5 Location: 191874-192 111 bp Feature: domain Description: Phage_int_SAM_5 Location: 192231-192471 bp Feature: domain Description: Phage_int_SAM_5 Location: 192 2 31-192 471 bp Feature: domain Description: INTN1_C_like Location: 192534-193035 bp Feature: domain Description: INTN1_C_like Location: 192 534-193035 bp Feature: gene Location: 193357-194763 bp Ori: OUN79741.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193699-194317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193699-194317 bp Feature: domain Description: GIIM Note: maturase Location: 194374-194581 bp Feature: domain Description: GIIM Note: maturase Location: 194374-194581 bp Feature: gene Location: 195424-196707 bp Ori: OUN79742.1 Feature: domain Description: Arm-DNA-bind_5 Location: 195493-195697 bp Feature: domain Description: Arm-DNA-bind_5 Location: 195493-195697 bp Feature: domain Description: Phage_int_SAM_5 Location: 195805-196081 bp Feature: domain Description: Phage_int_SAM_5 Location: 195805-196081 bp Feature: domain Description: INTN1_C_like Location: 196138-196669 bp Feature: domain Description: INTN1_C_like Location: 196138-196669 bp Feature: gene Location: 196777-198072 bp Ori: OUN79743.1 Feature: domain Description: DUF1016_N Location: 196837-197068 bp Feature: domain Description: DUF1016_N Location: 196837-197068 bp Feature: domain Description: DUF1016_N Location: 197317-197476 bp Feature: domain Description: DUF1016_N Location: 197317-197476 bp Feature: domain Description: YhcG_C Location: 197551-198007 bp Feature: domain Description: YhcG_C Location: 197551-198007 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), RVT-UG24, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), HTH_17 (pfam12728), RVT-GII, GIIM (pfam08388), DUF1016_N (pfam17761), YhcG_C

Seq: NFIC01000011.1 Bacteroides sp. An51A An51A_contig_11, whole genome shotgun sequence (76308 bp)
Overview 1 RT 1: 70063-76298 bp Neighborhood of RT #1 [70063, 76308] GT3_GSY2-like GT3_GSY2-like GT35_Glycogen_Phosphorylase-like RVT-GII Feature: gene Location: 70063-71742 bp Ori: OUN77616.1 Feature: domain Description: GT3_GSY2-like Location: 70093-71098 bp Feature: domain Description: GT3 _GSY2-like Location: 70093 -71098 bp Feature: domain Description: GT3_GSY2-like Location: 71176-71701 bp Feature: domain Description: GT3 _GSY2-like Location: 71176-71701 bp Feature: gene Location: 71772-74339 bp Ori: OUN77617.1 Feature: domain Description: GT35_Glycogen_Phosphorylase-like Location: 71859-74166 bp Feature: domain Description: GT3 5_Glycogen_Phosphorylase-like Location: 71859-74166 bp Feature: gene Location: 75506-76308 bp Ori: OUN77624.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75848-76298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75848-76298 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GT3_GSY2-like (cd03793), GT35_Glycogen_Phosphorylase-like (cd04299), RVT-GII

Seq: NFIC01000013.1 Bacteroides sp. An51A An51A_contig_13, whole genome shotgun sequence (67034 bp)
Overview 1 RT 1: 60792-67030 bp Neighborhood of RT #1 [60792, 67034] pgi HAD_ScGPP-like RVT-GII GIIM COG3547 Feature: gene Location: 60792-62141 bp Ori: OUN77119.1 Feature: domain Description: pgi Location: 60795-62133 bp Feature: domain Description: pgi Location: 60795-62133 bp Feature: gene Location: 62145-62873 bp Ori: OUN77120.1 Feature: domain Description: HAD_ScGPP-like Location: 62211-62847 bp Feature: domain Description: HAD_ScGPP-like Location: 62211-6284 7 bp Feature: gene Location: 64079-65485 bp Ori: OUN77121.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64421-65039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64 4 21-65039 bp Feature: domain Description: GIIM Note: maturase Location: 65096-65303 bp Feature: domain Description: GIIM Note: maturase Location: 65096-65303 bp Feature: gene Location: 66232-67034 bp Ori: OUN77122.1 Feature: domain Description: COG3547 Location: 66442-67030 bp Feature: domain Description: COG354 7 Location: 664 4 2-67030 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pgi (PRK14097), HAD_ScGPP-like (cd07527), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: NFIC01000025.1 Bacteroides sp. An51A An51A_contig_25, whole genome shotgun sequence (784 bp)
Overview 1 RT 1: 1-499 bp Neighborhood of RT #1 [1, 681] RVT-GII GIIM Feature: gene Location: 1-342 bp Ori: OUN76150.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-235 bp Feature: gene Location: 361-681 bp Ori: OUN76151.1 Feature: domain Description: GIIM Note: maturase Location: 364-499 bp Feature: domain Description: GIIM Note: maturase Location: 364-499 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NFIC01000014.1 Bacteroides sp. An51A An51A_contig_14, whole genome shotgun sequence (52088 bp)
Overview 1 RT 1: 48707-51900 bp Neighborhood of RT #1 [48707, 52088] NtrB BaeS Flavodoxin_5 PRK13795 RVT-GII GIIM Feature: gene Location: 48707-49975 bp Ori: OUN77056.1 Feature: domain Description: NtrB Location: 49046-49262 bp Feature: domain Description: NtrB Location: 49046 -4926 2 bp Feature: domain Description: BaeS Location: 49340-49973 bp Feature: domain Description: BaeS Location: 49340-49973 bp Feature: gene Location: 49959-50714 bp Ori: OUN77057.1 Feature: domain Description: Flavodoxin_5 Location: 49962-50304 bp Feature: domain Description: Flavodoxin_5 Location: 4996 2-50304 bp Feature: domain Description: PRK13795 Location: 50334-50658 bp Feature: domain Description: PRK13795 Location: 50334-506 58 bp Feature: gene Location: 51330-52088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51333-51642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51333-516 42 bp Feature: domain Description: GIIM Note: maturase Location: 51699-51900 bp Feature: domain Description: GIIM Note: maturase Location: 516 99-51900 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NtrB (COG3852), BaeS (COG0642), Flavodoxin_5 (pfam12724), PRK13795 (hypothetical protein; Provisional), RVT-GII, GIIM (pfam08388)