myRT

myRT report for GCA_002161675.1_ASM216167v1

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Seq: NFIH01000004.1 Pseudoflavonifractor sp. An44 An44_contig_4, whole genome shotgun sequence (139984 bp)
Overview 1 RT 1: 84382-89150 bp Neighborhood of RT #1 [84382, 89182] PAD_porph Mpg RVT-Retrons SLR SLR WYL Feature: gene Location: 84382-85182 bp Feature: domain Description: PAD_porph Location: 84454-85180 bp Feature: domain Description: PAD_porph Location: 84454-851 80 bp Feature: gene Location: 85204-85776 bp Feature: domain Description: Mpg Location: 85252-85756 bp Feature: domain Description: Mpg Location: 85252-85756 bp Feature: gene Location: 85799-86851 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 86033-86585 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 86033-86585 bp Feature: gene Location: 87259-87948 bp Feature: domain Description: SLR Location: 87289-87532 bp Feature: domain Description: SLR Location: 87289-87532 bp Feature: domain Description: SLR Location: 87697-87910 bp Feature: domain Description: SLR Location: 87697-8791 0 bp Feature: gene Location: 88097-89182 bp Feature: domain Description: WYL Location: 88583-89150 bp Feature: domain Description: WYL Location: 88583-891 50 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAD_porph (pfam04371), Mpg (COG2094), RVT-Retrons, SLR (sd00010), WYL (pfam13280)

Seq: NFIH01000035.1 Pseudoflavonifractor sp. An44 An44_contig_35, whole genome shotgun sequence (23719 bp)
Overview 1 RT 1: 19850-23466 bp Neighborhood of RT #1 [19850, 23642] SbcC PRK06842 RVT-GII GIIM Feature: gene Location: 19850-20542 bp Feature: domain Description: SbcC Location: 19940-20531 bp Feature: domain Description: SbcC Location: 19940-2 0531 bp Feature: gene Location: 20535-21089 bp Feature: domain Description: PRK06842 Location: 20574-21084 bp Feature: domain Description: PRK06842 Location: 2 0574-2 1084 bp Feature: gene Location: 22245-23642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22557-23178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 557-2 3178 bp Feature: domain Description: GIIM Note: maturase Location: 23238-23466 bp Feature: domain Description: GIIM Note: maturase Location: 2 32 38-2 3466 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SbcC (COG0419), PRK06842 (Fe-S-containing hydro-lyase), RVT-GII, GIIM (pfam08388)