myRT

myRT report for GCA_002161685.1_ASM216168v1

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Seq: NFII01000036.1 Bacteroides clarus strain An43 An43_contig_36, whole genome shotgun sequence (2506 bp)
Overview 1 RT 1: 99-2365 bp Neighborhood of RT #1 [99, 2403] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 99-548 bp Feature: gene Location: 580-2403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 844-1666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 844-1 666 bp Feature: domain Description: Intron_maturas2 Location: 1840-2083 bp Feature: domain Description: Intron_maturas2 Location: 1 840-2083 bp Feature: domain Description: HNHc Note: nucleases Location: 2194-2365 bp Feature: domain Description: HNHc Note: nucleases Location: 21 94-2365 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFII01000020.1 Bacteroides clarus strain An43 An43_contig_20, whole genome shotgun sequence (77251 bp)
Overview 1 RT 1: 10988-15085 bp Neighborhood of RT #1 [10988, 15085] RhaT HU_rel RVT-DGRs Avd_like Feature: gene Location: 10988-11899 bp Feature: domain Description: RhaT Location: 10994-11864 bp Feature: domain Description: RhaT Location: 10994-11864 bp Feature: gene Location: 12219-12713 bp Feature: domain Description: HU_rel Location: 12282-12582 bp Feature: domain Description: HU_rel Location: 12 2 82 -12 582 bp Feature: gene Location: 12982-14202 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13177-13906 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13177-13906 bp Feature: gene Location: 14177-14536 bp Feature: domain Description: Avd_like Location: 14204-14510 bp Feature: domain Description: Avd_like Location: 142 04-14510 bp Feature: gene Location: 14558-15085 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RhaT (TIGR00776), HU_rel (TIGR01201), RVT-DGRs, Avd_like (cd16376)

Seq: NFII01000011.1 Bacteroides clarus strain An43 An43_contig_11, whole genome shotgun sequence (130140 bp)
Overview 1 RT 1: 66333-69145 bp Neighborhood of RT #1 [66333, 69145] RVT-DGRs Feature: gene Location: 66333-66809 bp Feature: gene Location: 66828-67301 bp Feature: gene Location: 67507-68493 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 67717-68302 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 67717-683 02 bp Feature: gene Location: 68477-68794 bp Feature: gene Location: 68909-69145 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: NFII01000002.1 Bacteroides clarus strain An43 An43_contig_2, whole genome shotgun sequence (510718 bp)
Overview 1 RT 1: 228851-235878 bp Neighborhood of RT #1 [228851, 235967] RVT-Retrons UvrD UvrD UvrD Feature: gene Location: 228851-229393 bp Feature: gene Location: 229848-230765 bp Feature: gene Location: 230767-232227 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 230968-231601 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 230968-231601 bp Feature: gene Location: 232560-234329 bp Feature: gene Location: 234339-235967 bp Feature: domain Description: UvrD Location: 234366-234486 bp Feature: domain Description: UvrD Location: 234 366-234 4 86 bp Feature: domain Description: UvrD Location: 235158-235653 bp Feature: domain Description: UvrD Location: 235158-235653 bp Feature: domain Description: UvrD Location: 235725-235878 bp Feature: domain Description: UvrD Location: 235725-235878 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, UvrD (COG0210)

Seq: NFII01000001.1 Bacteroides clarus strain An43 An43_contig_1, whole genome shotgun sequence (547751 bp)
Overview 1 RT 1: 541995-545068 bp Neighborhood of RT #1 [541995, 545070] DUF4134 RVT-GII GIIM DUF4134 DUF4133 Feature: gene Location: 541995-542423 bp Feature: gene Location: 542689-542877 bp Feature: domain Description: DUF4134 Location: 542710-542875 bp Feature: domain Description: DUF4134 Location: 5 42710-5 42875 bp Feature: gene Location: 543418-544686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 543622-544279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 43622-5 44279 bp Feature: domain Description: GIIM Note: maturase Location: 544369-544573 bp Feature: domain Description: GIIM Note: maturase Location: 5 44369-5 445 73 bp Feature: gene Location: 544787-544900 bp Feature: domain Description: DUF4134 Location: 544793-544895 bp Feature: domain Description: DUF4134 Location: 5 44793-5 44895 bp Feature: gene Location: 544924-545070 bp Feature: domain Description: DUF4133 Location: 544942-545068 bp Feature: domain Description: DUF4133 Location: 5 44942-5 45 068 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571)