myRT

myRT report for GCA_002163245.1_ASM216324v1

Download annotations/find similar RTs

Seq: MAAL01000084.1 Gammaproteobacteria bacterium 42_54_T18 BD02T18_scaffold_61, whole genome shotgun sequence (132075 bp)
Overview 1 RT 1: 41133-48149 bp Neighborhood of RT #1 [41133, 48310] RVT_N RVT-GII COG3547 RVT-GII PRK08258 DUF4372 DDE_Tnp_1 Feature: gene Location: 41133-41345 bp Feature: gene Location: 42029-42280 bp Ori: OUR97527.1 Feature: domain Description: RVT_N Location: 42077-42275 bp Feature: domain Description: RVT_N Location: 42077-42275 bp Feature: gene Location: 42422-42895 bp Ori: OUR97528.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42425-42779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42425-42779 bp Feature: gene Location: 42898-43929 bp Ori: OUR97529.1 Feature: domain Description: COG3547 Location: 42913-43876 bp Feature: domain Description: COG3547 Location: 4291 3-43876 bp Feature: gene Location: 44269-44984 bp Feature: gene Location: 45251-45475 bp Feature: gene Location: 45472-46720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45676-46066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45676-46066 bp Feature: gene Location: 46862-47083 bp Ori: OUR97531.1 Feature: domain Description: PRK08258 Location: 46868-47078 bp Feature: domain Description: PRK08258 Location: 46868-47078 bp Feature: gene Location: 47159-48310 bp Ori: OUR97532.1 Feature: domain Description: DUF4372 Location: 47168-47387 bp Feature: domain Description: DUF4372 Location: 471 68-47387 bp Feature: domain Description: DDE_Tnp_1 Location: 47582-48149 bp Feature: domain Description: DDE_Tnp_1 Location: 47582-481 49 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, COG3547 (Transposase ), PRK08258 (enoyl-CoA hydratase family protein), DUF4372 (pfam14294), DDE_Tnp_1 (pfam01609)

Seq: MAAL01000058.1 Gammaproteobacteria bacterium 42_54_T18 BD02T18_scaffold_444, whole genome shotgun sequence (32982 bp)
Overview 1 RT 1: 19645-23672 bp Neighborhood of RT #1 [19645, 23672] InsE PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 19645-19974 bp Ori: OUS02663.1 Feature: domain Description: InsE Location: 19648-19930 bp Feature: domain Description: InsE Location: 19648-19930 bp Feature: gene Location: 19981-20370 bp Ori: OUS02664.1 Feature: domain Description: PHA02517 Location: 20011-20347 bp Feature: domain Description: PHA02 517 Location: 2 0011-2 0347 bp Feature: gene Location: 21011-22535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21284-22016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 12 84-2 2 016 bp Feature: domain Description: GIIM Note: maturase Location: 22088-22292 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 088-2 2 2 92 bp Feature: gene Location: 22616-23071 bp Feature: domain Description: PHA02517 Location: 22619-23069 bp Feature: domain Description: PHA02 517 Location: 2 2 619-2 3069 bp Feature: gene Location: 23451-23672 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: MAAL01000002.1 Gammaproteobacteria bacterium 42_54_T18 BD02T18_scaffold_706, whole genome shotgun sequence (31242 bp)
Overview 1 RT 1: 14278-19281 bp Neighborhood of RT #1 [14278, 19382] RMtype1_S_Hpy180ORF7835P_TRD2-CR2_like RMtype1_S_Hpy180ORF7835P_TRD2-CR2_like SLATT_5 RVT-UG17 COG5340 AbiEii Feature: gene Location: 14278-15603 bp Ori: OUS09079.1 Feature: domain Description: RMtype1_S_Hpy180ORF7835P_TRD2-CR2_like Location: 14314-14845 bp Feature: domain Description: RMtype1_S_Hpy180ORF783 5P_TRD2-CR2_like Location: 143 14-14845 bp Feature: domain Description: RMtype1_S_Hpy180ORF7835P_TRD2-CR2_like Location: 15319-15571 bp Feature: domain Description: RMtype1_S_Hpy180ORF783 5P_TRD2-CR2_like Location: 153 19-15571 bp Feature: gene Location: 15766-16362 bp Ori: OUS09080.1 Feature: domain Description: SLATT_5 Location: 15778-16339 bp Feature: domain Description: SLATT_5 Location: 15778-163 3 9 bp Feature: gene Location: 16359-17690 bp Ori: OUS09081.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 16587-17190 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 16587-17190 bp Feature: gene Location: 17843-18448 bp Ori: OUS09082.1 Feature: domain Description: COG5340 Location: 17933-18338 bp Feature: domain Description: COG53 40 Location: 1793 3 -183 3 8 bp Feature: gene Location: 18465-19382 bp Ori: OUS09083.1 Feature: domain Description: AbiEii Location: 18582-19281 bp Feature: domain Description: AbiEii Location: 18582-19281 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RMtype1_S_Hpy180ORF7835P_TRD2-CR2_like (cd17283), SLATT_5 (pfam18160), RVT-UG17, COG5340 (Transcriptional regulator, predicted component of viral defense system ), AbiEii (pfam08843)