myRT

myRT report for GCA_002163715.1_ASM216371v1

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Seq: CP015698.1 Curvibacter sp. AEP1-3 genome (4367400 bp)
Overview 1 RT 1: 213806-221560 bp 2 RT 2: 1017342-1030777 bp 3 RT 3: 2085253-2088063 bp 4 RT 4: 2454385-2460985 bp 5 RT 5: 2734205-2742517 bp 6 RT 6: 2956060-2961598 bp 7 RT 7: 3351211-3359328 bp Neighborhood of RT #1 [213806, 221577] idonate-5-DH FadR RVT-GII GIIM RVT-GII GIIM PDR_like PRK07609 HcaE Neighborhood of RT #2 [1017342, 1030782] PLN02278 RVT-GII GIIM MarR outer_NodT PRK15136 efflux_EmrB RVT-GII GIIM RVT-GII GIIM pcaJ_scoB_fam Neighborhood of RT #3 [2085253, 2088245] Acetyltransf_1 RVT-GII GIIM Neighborhood of RT #4 [2454385, 2461002] VanZ COG1981 RVT-GII GIIM ALAD_PBGS_aspartate_rich TmCorA-like Neighborhood of RT #5 [2734205, 2742603] ALDH_KGSADH-YcbD XylF RVT-GII GIIM RVT-GII GIIM AIM24 M48C_Oma1_like Neighborhood of RT #6 [2956060, 2961603] YaeQ PRK09285 RVT_N RVT-GII GIIM HNHc PRK10357 Neighborhood of RT #7 [3351211, 3359333] Pectate_lyase22 LysR RVT-GII GIIM RVT-GII GIIM PBP2_GltI_DEBP PLN02599 Feature: gene Location: 213806-214819 bp Feature: domain Description: idonate-5-DH Location: 213821-214808 bp Feature: domain Description: idonate-5-DH Location: 21 3821 -21 4808 bp Feature: gene Location: 214840-215538 bp Feature: domain Description: FadR Location: 214852-215509 bp Feature: domain Description: FadR Location: 21 4852-21 5509 bp Feature: gene Location: 215714-217108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 216044-216662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 6044-21 6662 bp Feature: domain Description: GIIM Note: maturase Location: 216713-216926 bp Feature: domain Description: GIIM Note: maturase Location: 21 671 3-21 6926 bp Feature: gene Location: 217616-219010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 217946-218564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 7946-21 8564 bp Feature: domain Description: GIIM Note: maturase Location: 218615-218828 bp Feature: domain Description: GIIM Note: maturase Location: 21 861 5-21 8828 bp Feature: gene Location: 219533-220525 bp Feature: domain Description: PDR_like Location: 219596-220232 bp Feature: domain Description: PDR_like Location: 21 9596-220232 bp Feature: domain Description: PRK07609 Location: 220268-220505 bp Feature: domain Description: PRK07609 Location: 220268-220505 bp Feature: gene Location: 220522-221577 bp Feature: domain Description: HcaE Location: 220528-221560 bp Feature: domain Description: HcaE Location: 220528-221 560 bp Feature: gene Location: 1017342-1018814 bp Feature: domain Description: PLN02278 Location: 1017360-1018803 bp Feature: domain Description: PLN02278 Location: 1 01 7360-1 01 8803 bp Feature: gene Location: 1018827-1019123 bp Feature: gene Location: 1019300-1020694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1019630-1020248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 9630-1 020248 bp Feature: domain Description: GIIM Note: maturase Location: 1020299-1020512 bp Feature: domain Description: GIIM Note: maturase Location: 1 020299-1 02051 2 bp Feature: gene Location: 1020831-1021340 bp Feature: domain Description: MarR Location: 1020942-1021287 bp Feature: domain Description: MarR Location: 1 020942-1 021 287 bp Feature: gene Location: 1021348-1022847 bp Feature: domain Description: outer_NodT Location: 1021414-1022788 bp Feature: domain Description: outer_NodT Location: 1 021 41 4-1 022788 bp Feature: gene Location: 1022901-1024166 bp Feature: domain Description: PRK15136 Location: 1022928-1024107 bp Feature: domain Description: PRK1 51 36 Location: 1 022928-1 0241 07 bp Feature: gene Location: 1024173-1025732 bp Feature: domain Description: efflux_EmrB Location: 1024236-1025673 bp Feature: domain Description: efflux_EmrB Location: 1 024236-1 025673 bp Feature: gene Location: 1025820-1027214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1026150-1026768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0261 50-1 026768 bp Feature: domain Description: GIIM Note: maturase Location: 1026819-1027032 bp Feature: domain Description: GIIM Note: maturase Location: 1 02681 9-1 027032 bp Feature: gene Location: 1027722-1029116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1028052-1028670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 028052-1 028670 bp Feature: domain Description: GIIM Note: maturase Location: 1028721-1028934 bp Feature: domain Description: GIIM Note: maturase Location: 1 028721 -1 028934 bp Feature: gene Location: 1029602-1030090 bp Feature: gene Location: 1030144-1030782 bp Feature: domain Description: pcaJ_scoB_fam Location: 1030153-1030777 bp Feature: domain Description: pcaJ_scoB_fam Location: 1 0301 53-1 030777 bp Feature: gene Location: 2085253-2085987 bp Feature: domain Description: Acetyltransf_1 Location: 2085529-2085775 bp Feature: domain Description: Acetyltransf_1 Location: 2085529-2085775 bp Feature: gene Location: 2086049-2086756 bp Feature: gene Location: 2086851-2088245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2087181-2087799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20871 81 -2087799 bp Feature: domain Description: GIIM Note: maturase Location: 2087850-2088063 bp Feature: domain Description: GIIM Note: maturase Location: 2087850-2088063 bp Feature: gene Location: 2454385-2455479 bp Feature: domain Description: VanZ Location: 2454424-2454766 bp Feature: domain Description: VanZ Location: 2454424-2454766 bp Feature: gene Location: 2455492-2455971 bp Feature: domain Description: COG1981 Location: 2455543-2455969 bp Feature: domain Description: COG1 981 Location: 2455543-2455969 bp Feature: gene Location: 2456362-2457756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2456692-2457310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2456692-245731 0 bp Feature: domain Description: GIIM Note: maturase Location: 2457361-2457574 bp Feature: domain Description: GIIM Note: maturase Location: 2457361 -2457574 bp Feature: gene Location: 2458678-2459811 bp Feature: domain Description: ALAD_PBGS_aspartate_rich Location: 2458831-2459803 bp Feature: domain Description: ALAD_PBGS_aspartate_rich Location: 2458831 -2459803 bp Feature: gene Location: 2459884-2461002 bp Feature: domain Description: TmCorA-like Location: 2459980-2460985 bp Feature: domain Description: TmCorA-like Location: 2459980-2460985 bp Feature: gene Location: 2734205-2735644 bp Feature: domain Description: ALDH_KGSADH-YcbD Location: 2734223-2735636 bp Feature: domain Description: ALDH_KGSADH-YcbD Location: 2734223-2735636 bp Feature: gene Location: 2735662-2736726 bp Feature: domain Description: XylF Location: 2735707-2736721 bp Feature: domain Description: XylF Location: 2735707-2736721 bp Feature: gene Location: 2737216-2738610 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2737546-2738164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2737546-27381 64 bp Feature: domain Description: GIIM Note: maturase Location: 2738215-2738428 bp Feature: domain Description: GIIM Note: maturase Location: 273821 5-2738428 bp Feature: gene Location: 2739118-2740512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2739448-2740066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2739448-2740066 bp Feature: domain Description: GIIM Note: maturase Location: 2740117-2740330 bp Feature: domain Description: GIIM Note: maturase Location: 27401 1 7-2740330 bp Feature: gene Location: 2740656-2741462 bp Feature: domain Description: AIM24 Location: 2740668-2741364 bp Feature: domain Description: AIM24 Location: 2740668-2741 364 bp Feature: gene Location: 2741467-2742603 bp Feature: domain Description: M48C_Oma1_like Location: 2741887-2742517 bp Feature: domain Description: M48C_Oma1 _like Location: 2741 887-274251 7 bp Feature: gene Location: 2956060-2956620 bp Feature: domain Description: YaeQ Location: 2956063-2956603 bp Feature: domain Description: YaeQ Location: 2956063-2956603 bp Feature: gene Location: 2956728-2958167 bp Feature: domain Description: PRK09285 Location: 2956797-2958162 bp Feature: domain Description: PRK09285 Location: 2956797-29581 62 bp Feature: gene Location: 2958241-2959950 bp Feature: RT Description: RVT_N Location: 2958292-2958532 bp Feature: RT Description: RVT_N Location: 2958292-2958532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2958580-2959228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2958580-2959228 bp Feature: domain Description: GIIM Note: maturase Location: 2959279-2959513 bp Feature: domain Description: GIIM Note: maturase Location: 2959279-295951 3 bp Feature: domain Description: HNHc Note: nucleases Location: 2959729-2959900 bp Feature: domain Description: HNHc Note: nucleases Location: 2959729-2959900 bp Feature: gene Location: 2960099-2960206 bp Feature: gene Location: 2960989-2961603 bp Feature: domain Description: PRK10357 Location: 2960992-2961598 bp Feature: domain Description: PRK1 0357 Location: 2960992-2961 598 bp Feature: gene Location: 3351211-3352359 bp Feature: domain Description: Pectate_lyase22 Location: 3351214-3352357 bp Feature: domain Description: Pectate_lyase22 Location: 3351 21 4-3352357 bp Feature: gene Location: 3352431-3353408 bp Feature: domain Description: LysR Location: 3352434-3353325 bp Feature: domain Description: LysR Location: 3352434-3353325 bp Feature: gene Location: 3354000-3355394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3354330-3354948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3354330-3354948 bp Feature: domain Description: GIIM Note: maturase Location: 3354999-3355212 bp Feature: domain Description: GIIM Note: maturase Location: 3354999-335521 2 bp Feature: gene Location: 3355902-3357296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3356232-3356850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3356232-3356850 bp Feature: domain Description: GIIM Note: maturase Location: 3356901-3357114 bp Feature: domain Description: GIIM Note: maturase Location: 3356901 -33571 1 4 bp Feature: gene Location: 3357377-3358234 bp Feature: domain Description: PBP2_GltI_DEBP Location: 3357425-3358136 bp Feature: domain Description: PBP2_GltI_DEBP Location: 3357425-33581 36 bp Feature: gene Location: 3358287-3359333 bp Feature: domain Description: PLN02599 Location: 3358299-3359328 bp Feature: domain Description: PLN02599 Location: 3358299-3359328 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT idonate-5-DH (cd08232), FadR (COG2186), RVT-GII, GIIM (pfam08388), PDR_like (cd06185), PRK07609 (CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated), HcaE (COG4638), PLN02278 (succinic semialdehyde dehydrogenase), MarR (pfam01047), outer_NodT (TIGR01845)
PRK15136 (multidrug efflux MFS transporter periplasmic adaptor subunit EmrA), efflux_EmrB (TIGR00711), pcaJ_scoB_fam (TIGR02428), Acetyltransf_1 (pfam00583), VanZ (pfam04892), COG1981 (Uncharacterized membrane protein ), ALAD_PBGS_aspartate_rich (cd04823), TmCorA-like (cd12822), ALDH_KGSADH-YcbD (cd07097), XylF (COG4213)
AIM24 (pfam01987), M48C_Oma1_like (cd07342), YaeQ (pfam07152), PRK09285 (adenylosuccinate lyase; Provisional), RVT_N (pfam13655), HNHc (smart00507), PRK10357 (putative glutathione S-transferase; Provisional), Pectate_lyase22 (pfam14583), LysR (COG0583), PBP2_GltI_DEBP (cd13688)
PLN02599 (dihydroorotase)