myRT

myRT report for GCA_002164955.1_ASM216495v1

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Seq: NGVH01000100.1 Escherichia coli strain SCEC020016 NODE_100_length_2424_cov_68.5765, whole genome shotgun sequence (2424 bp)
Overview 1 RT 1: 168-2356 bp Neighborhood of RT #1 [168, 2356] RVT-GII GIIM Feature: gene Location: 168-1691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 441-1173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 441 -1 1 73 bp Feature: domain Description: GIIM Note: maturase Location: 1248-1446 bp Feature: domain Description: GIIM Note: maturase Location: 1 248-1 446 bp Feature: gene Location: 1985-2356 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NGVH01000105.1 Escherichia coli strain SCEC020016 NODE_105_length_1916_cov_512.486, whole genome shotgun sequence (1916 bp)
Overview 1 RT 1: 61-1914 bp Neighborhood of RT #1 [61, 1914] RVT-GII Feature: gene Location: 61-1548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 466-1156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 466-1156 bp Feature: gene Location: 1702-1914 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NGVH01000023.1 Escherichia coli strain SCEC020016 NODE_23_length_76939_cov_72.8651, whole genome shotgun sequence (76939 bp)
Overview 1 RT 1: 72936-76022 bp Neighborhood of RT #1 [72936, 76063] RVT-Retrons Arm-DNA-bind_3 Feature: gene Location: 72936-73085 bp Feature: gene Location: 73386-74372 bp Feature: gene Location: 74374-75306 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 74476-75070 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 74476-75070 bp Feature: gene Location: 75332-75577 bp Feature: gene Location: 75761-76063 bp Feature: domain Description: Arm-DNA-bind_3 Location: 75770-76022 bp Feature: domain Description: Arm-DNA-bind_3 Location: 75770-76022 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Arm-DNA-bind_3 (pfam13356)

Seq: NGVH01000031.1 Escherichia coli strain SCEC020016 NODE_31_length_52367_cov_71.7185, whole genome shotgun sequence (52367 bp)
Overview 1 RT 1: 45192-52356 bp Neighborhood of RT #1 [45192, 52364] prfC PRK10597 RVT-Retrons TIR_2 Peptidase_S74 APC_N_CC Feature: gene Location: 45192-46778 bp Feature: domain Description: prfC Location: 45210-46776 bp Feature: domain Description: prfC Location: 4 5210-4 6776 bp Feature: gene Location: 46998-47258 bp Feature: domain Description: PRK10597 Location: 47001-47241 bp Feature: domain Description: PRK10597 Location: 4 7001-4 724 1 bp Feature: gene Location: 47616-49220 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47907-48498 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4 7907-4 84 98 bp Feature: domain Description: TIR_2 Location: 48825-49158 bp Feature: domain Description: TIR_2 Location: 4 8825-4 9158 bp Feature: gene Location: 49550-49723 bp Feature: gene Location: 49848-52364 bp Feature: domain Description: Peptidase_S74 Location: 51933-52080 bp Feature: domain Description: Peptidase_S74 Location: 51933-52080 bp Feature: domain Description: APC_N_CC Location: 52233-52356 bp Feature: domain Description: APC_N_CC Location: 52233-52356 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons, TIR_2 (pfam13676), Peptidase_S74 (pfam13884), APC_N_CC (pfam16689)

Seq: NGVH01000054.1 Escherichia coli strain SCEC020016 NODE_54_length_24457_cov_105.196, whole genome shotgun sequence (24457 bp)
Overview 1 RT 1: 14308-18219 bp Neighborhood of RT #1 [14308, 18219] Antirestrict DUF1380 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 14308-14733 bp Feature: domain Description: Antirestrict Location: 14443-14731 bp Feature: domain Description: Antirestrict Location: 14443-14731 bp Feature: gene Location: 14780-15202 bp Feature: domain Description: DUF1380 Location: 14783-15077 bp Feature: domain Description: DUF1380 Location: 14783-15 077 bp Feature: gene Location: 15703-17370 bp Feature: RT Description: RVT_N Location: 15751-15988 bp Feature: RT Description: RVT_N Location: 15 75 1-15 988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16039-16681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16039-16681 bp Feature: domain Description: GIIM Note: maturase Location: 16732-16966 bp Feature: domain Description: GIIM Note: maturase Location: 16732-16966 bp Feature: domain Description: HNHc Note: nucleases Location: 17176-17335 bp Feature: domain Description: HNHc Note: nucleases Location: 17176-17335 bp Feature: gene Location: 17650-17832 bp Feature: gene Location: 17944-18219 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Antirestrict (pfam03230), DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)