myRT

myRT report for GCA_002165035.1_ASM216503v1

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Seq: NGVK01000039.1 Escherichia coli strain SCEC020004 NODE_39_length_34246_cov_166.151, whole genome shotgun sequence (34246 bp)
Overview 1 RT 1: 26852-30823 bp Neighborhood of RT #1 [26852, 30828] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 26852-27187 bp Feature: gene Location: 27640-27849 bp Feature: gene Location: 27984-29885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28251-29082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28251 -29082 bp Feature: domain Description: Intron_maturas2 Location: 29196-29454 bp Feature: domain Description: Intron_maturas2 Location: 291 96-29454 bp Feature: domain Description: HNHc Note: nucleases Location: 29628-29790 bp Feature: domain Description: HNHc Note: nucleases Location: 29628-29790 bp Feature: gene Location: 30080-30532 bp Feature: domain Description: PRK13732 Location: 30086-30530 bp Feature: domain Description: PRK1 3732 Location: 30086-30530 bp Feature: gene Location: 30595-30828 bp Feature: domain Description: DUF905 Location: 30625-30823 bp Feature: domain Description: DUF905 Location: 30625-30823 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: NGVK01000004.1 Escherichia coli strain SCEC020004 NODE_4_length_247315_cov_97.4398, whole genome shotgun sequence (247315 bp)
Overview 1 RT 1: 209197-215284 bp Neighborhood of RT #1 [209197, 215284] Psu PRK09678 RVT-UG8 RVT-UG3 PRK09692 Feature: gene Location: 209197-209751 bp Feature: domain Description: Psu Location: 209221-209731 bp Feature: domain Description: Psu Location: 2 092 2 1-2 09731 bp Feature: gene Location: 209753-210025 bp Feature: domain Description: PRK09678 Location: 209762-209930 bp Feature: domain Description: PRK09678 Location: 2 09762 -2 09930 bp Feature: gene Location: 210474-212477 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 210969-211416 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2 10969-2 11416 bp Feature: gene Location: 212481-213677 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 212766-213228 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 2 12 766-2 132 2 8 bp Feature: gene Location: 213679-214857 bp Feature: domain Description: PRK09692 Location: 213685-214843 bp Feature: domain Description: PRK09692 Location: 2 13685-2 14843 bp Feature: gene Location: 215132-215284 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG8, RVT-UG3, PRK09692 (Integrase; provisional)