myRT

myRT report for GCA_002172675.1_croco123Su3

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Seq: NETF01000005.1 Unicellular cyanobacterium SU3 NODE_106_length_29622_cov_123.948_com, whole genome shotgun sequence (29622 bp)
Overview 1 RT 1: 14671-20498 bp Neighborhood of RT #1 [14671, 20498] COG3825 YfmG Avd_like RVT-DGRs YfmG Feature: gene Location: 14671-17433 bp Feature: domain Description: COG3825 Location: 15022-15502 bp Feature: domain Description: COG3825 Location: 1 5022-1 5502 bp Feature: domain Description: YfmG Location: 16531-17413 bp Feature: domain Description: YfmG Location: 1 6531 -1 741 3 bp Feature: gene Location: 17552-17893 bp Feature: domain Description: Avd_like Location: 17570-17876 bp Feature: domain Description: Avd_like Location: 1 7570-1 7876 bp Feature: gene Location: 17910-18968 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 18120-18762 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 81 20-1 8762 bp Feature: gene Location: 19285-20178 bp Feature: domain Description: YfmG Location: 19363-20158 bp Feature: domain Description: YfmG Location: 1 9363-201 58 bp Feature: gene Location: 20334-20498 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3825 (CoxE;Uncharacterized conserved protein, contains von Willebrand factor type A (vWA) domain ), YfmG (COG1262), Avd_like (cd16376), RVT-DGRs

Seq: NETF01000012.1 Unicellular cyanobacterium SU3 NODE_11_length_101245_cov_110.694_com, whole genome shotgun sequence (101245 bp)
Overview 1 RT 1: 4366-6751 bp Neighborhood of RT #1 [4366, 7149] TIGR02436 HNH RVT-GII DDE_Tnp_IS66 zf-IS66 Feature: gene Location: 4366-4518 bp Feature: domain Description: TIGR02436 Location: 4372-4504 bp Feature: domain Description: TIGR02 436 Location: 4372 -4504 bp Feature: gene Location: 4573-4800 bp Feature: domain Description: HNH Note: nucleases Location: 4591-4693 bp Feature: domain Description: HNH Note: nucleases Location: 4591-4693 bp Feature: gene Location: 4811-5503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4817-5411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4817-5411 bp Feature: gene Location: 5807-6274 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5813-6230 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5813-62 30 bp Feature: gene Location: 6286-7149 bp Feature: domain Description: zf-IS66 Location: 6610-6751 bp Feature: domain Description: zf-IS66 Location: 6610-6751 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02436 (four helix bundle protein), HNH (pfam01844), RVT-GII, DDE_Tnp_IS66 (pfam03050), zf-IS66 (pfam13005)

Seq: NETF01000013.1 Unicellular cyanobacterium SU3 NODE_124_length_24676_cov_141.066_com, whole genome shotgun sequence (24676 bp)
Overview 1 RT 1: 2281-9700 bp Neighborhood of RT #1 [2281, 9700] BaeS PRK15347 PhoB Ion_trans_2 TrkA RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2281-4788 bp Feature: domain Description: BaeS Location: 3205-3973 bp Feature: domain Description: BaeS Location: 3 205-3 973 bp Feature: domain Description: PRK15347 Location: 4018-4249 bp Feature: domain Description: PRK153 47 Location: 4018-4249 bp Feature: domain Description: PhoB Location: 4459-4699 bp Feature: domain Description: PhoB Location: 4459-4699 bp Feature: gene Location: 4807-5874 bp Feature: domain Description: Ion_trans_2 Location: 4882-5095 bp Feature: domain Description: Ion_trans_2 Location: 4882-5095 bp Feature: domain Description: TrkA Location: 5167-5836 bp Feature: domain Description: TrkA Location: 5167-583 6 bp Feature: gene Location: 7016-8923 bp Feature: domain Description: RVT_N Location: 7055-7301 bp Feature: domain Description: RVT_N Location: 7055-73 01 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7343-8012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73 43 -8012 bp Feature: domain Description: GIIM Note: maturase Location: 8111-8342 bp Feature: domain Description: GIIM Note: maturase Location: 8111-83 42 bp Feature: domain Description: HNHc Note: nucleases Location: 8540-8696 bp Feature: domain Description: HNHc Note: nucleases Location: 8540-8696 bp Feature: gene Location: 9040-9477 bp Feature: gene Location: 9548-9700 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BaeS (COG0642), PRK15347 (two component system sensor kinase), PhoB (TIGR02154), Ion_trans_2 (pfam07885), TrkA (COG0569), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NETF01000032.1 Unicellular cyanobacterium SU3 NODE_15_length_90571_cov_76.4502_comp, whole genome shotgun sequence (90571 bp)
Overview 1 RT 1: 1-2174 bp Neighborhood of RT #1 [1, 2185] RVT-GII PRK05479 BCCP Feature: gene Location: 1-183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37-184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37-184 bp Feature: gene Location: 596-1591 bp Feature: domain Description: PRK05479 Location: 599-1583 bp Feature: domain Description: PRK054 79 Location: 599-1583 bp Feature: gene Location: 1715-2185 bp Feature: domain Description: BCCP Location: 1724-2174 bp Feature: domain Description: BCCP Location: 1724 -2174 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK05479 (ketol-acid reductoisomerase; Provisional), BCCP (TIGR00531)

Seq: NETF01000046.1 Unicellular cyanobacterium SU3 NODE_190_length_14023_cov_64.5953_com, whole genome shotgun sequence (14023 bp)
Overview 1 RT 1: 1-1944 bp Neighborhood of RT #1 [1, 1979] RVT_N RVT-GII XhlA Feature: gene Location: 1-774 bp Feature: domain Description: RVT_N Location: 181-427 bp Feature: domain Description: RVT_N Location: 181-427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 475-757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 475 -75 7 bp Feature: gene Location: 1325-1621 bp Feature: gene Location: 1668-1979 bp Feature: domain Description: XhlA Location: 1752-1944 bp Feature: domain Description: XhlA Location: 175 2-1944 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, XhlA (pfam10779)

Seq: NETF01000079.1 Unicellular cyanobacterium SU3 NODE_258_length_7099_cov_159.714_comp, whole genome shotgun sequence (7099 bp)
Overview 1 RT 1: 4494-7099 bp Neighborhood of RT #1 [4494, 7098] SnoaL_2 DUF4079 RVT-GII Feature: gene Location: 4494-5654 bp Feature: domain Description: SnoaL_2 Location: 4530-4806 bp Feature: domain Description: SnoaL_2 Location: 4530-4806 bp Feature: gene Location: 5814-6299 bp Feature: domain Description: DUF4079 Location: 5892-6294 bp Feature: domain Description: DUF4079 Location: 5892-6 294 bp Feature: gene Location: 6745-7098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6868-7099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 86 8-7099 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SnoaL_2 (pfam12680), DUF4079 (pfam13301), RVT-GII

Seq: NETF01000088.1 Unicellular cyanobacterium SU3 NODE_275_length_5485_cov_73.7303_comp, whole genome shotgun sequence (5485 bp)
Overview 1 RT 1: 250-1723 bp Neighborhood of RT #1 [250, 1723] RVT-GII Feature: gene Location: 250-1116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 253-877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 253-87 7 bp Feature: gene Location: 1143-1319 bp Feature: gene Location: 1550-1723 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NETF01000110.1 Unicellular cyanobacterium SU3 NODE_2_length_165757_cov_90.9731_comp, whole genome shotgun sequence (165757 bp)
Overview 1 RT 1: 1-1643 bp Neighborhood of RT #1 [1, 1651] RVT-GII PRK12289 SirA_YedF_YeeD Feature: gene Location: 1-126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-127 bp Feature: gene Location: 254-1384 bp Feature: domain Description: PRK12289 Location: 293-1343 bp Feature: domain Description: PRK1228 9 Location: 293-1343 bp Feature: gene Location: 1409-1651 bp Feature: domain Description: SirA_YedF_YeeD Location: 1442-1643 bp Feature: domain Description: SirA_YedF_YeeD Location: 1442-1643 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK12289 (small ribosomal subunit biogenesis GTPase RsgA), SirA_YedF_YeeD (cl00436)

Seq: NETF01000139.1 Unicellular cyanobacterium SU3 NODE_357_length_1739_cov_121.406_comp, whole genome shotgun sequence (1739 bp)
Overview 1 RT 1: 39-1593 bp Neighborhood of RT #1 [39, 1691] DUF2887 RVT_N RVT-GII Feature: gene Location: 39-224 bp Feature: domain Description: DUF2887 Location: 45-201 bp Feature: domain Description: DUF2887 Location: 45-201 bp Feature: gene Location: 531-1691 bp Feature: domain Description: RVT_N Location: 612-858 bp Feature: domain Description: RVT_N Location: 612-858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 900-1593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9 00-159 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2887 (pfam11103), RVT_N (pfam13655), RVT-GII

Seq: NETF01000156.1 Unicellular cyanobacterium SU3 NODE_382_length_1097_cov_164.465_comp, whole genome shotgun sequence (1097 bp)
Overview 1 RT 1: 89-1064 bp Neighborhood of RT #1 [89, 1096] RVT-GII RVT-GII GIIM McrA Feature: gene Location: 89-1096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110-341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110 -341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 341-509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 341-509 bp Feature: domain Description: GIIM Note: maturase Location: 566-695 bp Feature: domain Description: GIIM Note: maturase Location: 566-695 bp Feature: domain Description: McrA Location: 764-1064 bp Feature: domain Description: McrA Location: 764-10 64 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: NETF01000171.1 Unicellular cyanobacterium SU3 NODE_48_length_53005_cov_71.0328_comp, whole genome shotgun sequence (53005 bp)
Overview 1 RT 1: 5637-10273 bp Neighborhood of RT #1 [5637, 10273] PRK07453 RVT_N RVT-GII GIIM HNH PRK07453 Feature: gene Location: 5637-5843 bp Feature: gene Location: 6409-7005 bp Feature: domain Description: PRK07453 Location: 6412-6997 bp Feature: domain Description: PRK07453 Location: 6412-6997 bp Feature: gene Location: 7685-9484 bp Feature: domain Description: RVT_N Location: 7721-7967 bp Feature: domain Description: RVT_N Location: 7721-7967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8012-8702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8012-8702 bp Feature: domain Description: GIIM Note: maturase Location: 8810-9038 bp Feature: domain Description: GIIM Note: maturase Location: 8810-9038 bp Feature: domain Description: HNH Note: nucleases Location: 9254-9389 bp Feature: domain Description: HNH Note: nucleases Location: 9254-9389 bp Feature: gene Location: 9591-9953 bp Feature: domain Description: PRK07453 Location: 9594-9948 bp Feature: domain Description: PRK07453 Location: 9594-9948 bp Feature: gene Location: 10091-10273 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07453 (protochlorophyllide reductase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: NETF01000174.1 Unicellular cyanobacterium SU3 NODE_50_length_49581_cov_93.8304_comp, whole genome shotgun sequence (49581 bp)
Overview 1 RT 1: 18376-25300 bp Neighborhood of RT #1 [18376, 25374] PS_II_psbQ_bact PLN03084 RVT_N RVT-GII GIIM HNHc PRK14983 PBP2_NikA_DppA_OppA_like_4 Feature: gene Location: 18376-18819 bp Feature: domain Description: PS_II_psbQ_bact Location: 18388-18811 bp Feature: domain Description: PS_II_psbQ_bact Location: 18388-18811 bp Feature: gene Location: 18938-19783 bp Feature: domain Description: PLN03084 Location: 18974-19757 bp Feature: domain Description: PLN03084 Location: 18974-19757 bp Feature: gene Location: 20705-22621 bp Feature: domain Description: RVT_N Location: 20744-20990 bp Feature: domain Description: RVT_N Location: 20744-20990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21032-21701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21032-21701 bp Feature: domain Description: GIIM Note: maturase Location: 21803-22034 bp Feature: domain Description: GIIM Note: maturase Location: 21803-22034 bp Feature: domain Description: HNHc Note: nucleases Location: 22226-22388 bp Feature: domain Description: HNHc Note: nucleases Location: 22226-22388 bp Feature: gene Location: 22752-23447 bp Feature: domain Description: PRK14983 Location: 22755-23442 bp Feature: domain Description: PRK14983 Location: 22755-23442 bp Feature: gene Location: 23611-25374 bp Feature: domain Description: PBP2_NikA_DppA_OppA_like_4 Location: 23743-25300 bp Feature: domain Description: PBP2_NikA_DppA_OppA_like_4 Location: 23743-25300 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PS_II_psbQ_bact (TIGR03042), PLN03084 (alpha/beta hydrolase fold protein; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK14983 (aldehyde decarbonylase; Provisional), PBP2_NikA_DppA_OppA_like_4 (cd08500)

Seq: NETF01000189.1 Unicellular cyanobacterium SU3 NODE_69_length_39898_cov_72.8678_comp, whole genome shotgun sequence (39898 bp)
Overview 1 RT 1: 14239-17294 bp Neighborhood of RT #1 [14239, 17302] PRK13612 MoaB RVT-UG16 HicB_lk_antitox YcfA Feature: gene Location: 14239-14574 bp Feature: domain Description: PRK13612 Location: 14242-14569 bp Feature: domain Description: PRK13 612 Location: 14242-14569 bp Feature: gene Location: 14695-15195 bp Feature: domain Description: MoaB Location: 14731-15190 bp Feature: domain Description: MoaB Location: 14731-15190 bp Feature: gene Location: 15215-16714 bp Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 15593-16007 bp Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 15593-16007 bp Feature: gene Location: 16804-17103 bp Feature: domain Description: HicB_lk_antitox Location: 16816-17068 bp Feature: domain Description: HicB_lk_antitox Location: 16816-17068 bp Feature: gene Location: 17114-17302 bp Feature: domain Description: YcfA Location: 17117-17294 bp Feature: domain Description: YcfA Location: 17117-17294 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13612 (photosystem II reaction center protein Psb28; Provisional), MoaB (COG0521), RVT-UG16, HicB_lk_antitox (pfam15919), YcfA (COG1724)

Seq: NETF01000191.1 Unicellular cyanobacterium SU3 NODE_70_length_39665_cov_84.2364_comp, whole genome shotgun sequence (39665 bp)
Overview 1 RT 1: 1981-9065 bp 2 RT 2: 23872-27509 bp Neighborhood of RT #1 [1981, 9289] YfiH PRK02812 RVT_N RVT-GII GIIM HNHc PLN02433 DUF2887 Neighborhood of RT #2 [23872, 27517] group_II_RT_mat RVT-GII GIIM HNH dam Feature: gene Location: 1981-2775 bp Feature: domain Description: YfiH Location: 2008-2767 bp Feature: domain Description: YfiH Location: 2008-2767 bp Feature: gene Location: 2842-3834 bp Feature: domain Description: PRK02812 Location: 2854-3832 bp Feature: domain Description: PRK02812 Location: 2854-3832 bp Feature: gene Location: 3909-5819 bp Feature: domain Description: RVT_N Location: 3948-4194 bp Feature: domain Description: RVT_N Location: 3948-4194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4236-4905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4236-4905 bp Feature: domain Description: GIIM Note: maturase Location: 5010-5238 bp Feature: domain Description: GIIM Note: maturase Location: 5010-5238 bp Feature: domain Description: HNHc Note: nucleases Location: 5445-5592 bp Feature: domain Description: HNHc Note: nucleases Location: 5445-5592 bp Feature: gene Location: 7248-8312 bp Feature: domain Description: PLN02433 Location: 7278-8292 bp Feature: domain Description: PLN02433 Location: 7278-8292 bp Feature: gene Location: 8471-9289 bp Feature: domain Description: DUF2887 Location: 8480-9065 bp Feature: domain Description: DUF2887 Location: 8480-9065 bp Feature: gene Location: 23872-24150 bp Feature: gene Location: 24461-24664 bp Feature: gene Location: 24847-26388 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 25018-25198 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 25018-25198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25243-25927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25243-25927 bp Feature: domain Description: GIIM Note: maturase Location: 26029-26260 bp Feature: domain Description: GIIM Note: maturase Location: 26029-26260 bp Feature: gene Location: 26443-26640 bp Feature: domain Description: HNH Note: nucleases Location: 26473-26608 bp Feature: domain Description: HNH Note: nucleases Location: 26473-26608 bp Feature: gene Location: 26756-27517 bp Feature: domain Description: dam Location: 26759-27509 bp Feature: domain Description: dam Location: 26759-27509 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfiH (COG1496), PRK02812 (ribose-phosphate pyrophosphokinase; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PLN02433 (uroporphyrinogen decarboxylase), DUF2887 (pfam11103), group_II_RT_mat (TIGR04416), HNH (pfam01844)
dam (TIGR00571)

Seq: NETF01000193.1 Unicellular cyanobacterium SU3 NODE_73_length_39400_cov_90.053_compo, whole genome shotgun sequence (39400 bp)
Overview 1 RT 1: 22781-25024 bp Neighborhood of RT #1 [22781, 25024] RVT-GII RVT-GII GIIM McrA Feature: gene Location: 22781-22948 bp Feature: gene Location: 23075-23362 bp Feature: gene Location: 23408-24304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23417-23546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23417-23546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23549-23717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23549-23717 bp Feature: domain Description: GIIM Note: maturase Location: 23774-23903 bp Feature: domain Description: GIIM Note: maturase Location: 23774-23903 bp Feature: domain Description: McrA Location: 23993-24272 bp Feature: domain Description: McrA Location: 23993-24272 bp Feature: gene Location: 24552-24782 bp Feature: gene Location: 24806-25024 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058)