myRT

myRT report for GCA_002172955.1_ASM217295v1

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Seq: NHBJ01000038.1 Afipia sp. TMED4 111769, whole genome shotgun sequence (80175 bp)
Overview 1 RT 1: 28610-38477 bp Neighborhood of RT #1 [28610, 38512] YbjD YbjD DEXQc_UvrD DEXQc_UvrD recB RVT-Retrons MPP_Mre11_N YhaN Feature: gene Location: 28610-30244 bp Ori: OUX59765.1 Feature: domain Description: YbjD Location: 28613-28754 bp Feature: domain Description: YbjD Location: 2861 3-28754 bp Feature: domain Description: YbjD Location: 29297-29957 bp Feature: domain Description: YbjD Location: 29297-29957 bp Feature: gene Location: 30241-31389 bp Ori: OUX59766.1 Feature: domain Description: DEXQc_UvrD Location: 30250-30433 bp Feature: domain Description: DEXQc_UvrD Location: 30250-30433 bp Feature: domain Description: DEXQc_UvrD Location: 30622-30823 bp Feature: domain Description: DEXQc_UvrD Location: 30622-30823 bp Feature: domain Description: recB Location: 31279-31330 bp Feature: domain Description: recB Location: 31 279-31 330 bp Feature: gene Location: 31491-33269 bp Ori: OUX59767.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31623-32244 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31 623-32244 bp Feature: gene Location: 33737-35005 bp Ori: OUX59768.1 Feature: domain Description: MPP_Mre11_N Location: 33749-34403 bp Feature: domain Description: MPP_Mre1 1 _N Location: 33749-34403 bp Feature: gene Location: 35009-38512 bp Ori: OUX59769.1 Feature: domain Description: YhaN Location: 35012-38477 bp Feature: domain Description: YhaN Location: 3501 2-38477 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbjD (COG3593), DEXQc_UvrD (cd17932), recB (TIGR00609), RVT-Retrons, MPP_Mre11_N (cd00840), YhaN (COG4717)

Seq: NHBJ01000020.1 Afipia sp. TMED4 MHASMcontig_712092, whole genome shotgun sequence (148129 bp)
Overview 1 RT 1: 144015-147545 bp Neighborhood of RT #1 [144015, 148108] MltB PG_binding_1 GalU RVT-UG28 Feature: gene Location: 144015-145454 bp Ori: OUX62284.1 Feature: domain Description: MltB Location: 144312-145233 bp Feature: domain Description: MltB Location: 144312 -1452 33 bp Feature: domain Description: PG_binding_1 Location: 145281-145440 bp Feature: domain Description: PG_binding_1 Location: 1452 81-145440 bp Feature: gene Location: 145866-146738 bp Ori: OUX62285.1 Feature: domain Description: GalU Location: 145869-146730 bp Feature: domain Description: GalU Location: 145869-146730 bp Feature: gene Location: 146756-148108 bp Ori: OUX62286.1 Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 146873-147545 bp Feature: RT Description: RVT-UG2 8 Note: UG2 8 RT Location: 146873-147545 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MltB (TIGR02282), PG_binding_1 (pfam01471), GalU (COG1210), RVT-UG28

Seq: NHBJ01000044.1 Afipia sp. TMED4 117036, whole genome shotgun sequence (119087 bp)
Overview 1 RT 1: 74220-79265 bp Neighborhood of RT #1 [74220, 79265] DUF2274 DDE_5 RVT-GII GIIM Feature: gene Location: 74220-74378 bp Ori: OUX59188.1 Feature: domain Description: DUF2274 Location: 74226-74349 bp Feature: domain Description: DUF2274 Location: 74226-743 49 bp Feature: gene Location: 74409-75761 bp Feature: domain Description: DDE_5 Location: 74487-75279 bp Feature: domain Description: DDE_5 Location: 74487-75279 bp Feature: gene Location: 76159-77460 bp Ori: OUX59233.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76444-77083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76444-77083 bp Feature: domain Description: GIIM Note: maturase Location: 77158-77377 bp Feature: domain Description: GIIM Note: maturase Location: 77158-773 77 bp Feature: gene Location: 78112-78318 bp Feature: gene Location: 78663-79265 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2274 (pfam10038), DDE_5 (pfam13546), RVT-GII, GIIM (pfam08388)