myRT

myRT report for GCA_002174025.1_ASM217402v1

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Seq: MOSS01000198.1 Klebsiella pneumoniae strain H18 contig_48_2, whole genome shotgun sequence (2767 bp)
Overview 1 RT 1: 2-2333 bp Neighborhood of RT #1 [2, 2335] RVT-GII DDE_Tnp_IS1 Feature: gene Location: 2-1486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 404-1094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 404-1 094 bp Feature: gene Location: 1832-2335 bp Ori: OUY74184.1 Feature: domain Description: DDE_Tnp_IS1 Location: 1943-2333 bp Feature: domain Description: DDE_Tnp_IS1 Location: 1 943-2333 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_IS1 (pfam03400)

Seq: MOSS01000217.1 Klebsiella pneumoniae strain H18 contig_54, whole genome shotgun sequence (2396 bp)
Overview 1 RT 1: 154-1417 bp Neighborhood of RT #1 [154, 1662] RVT-GII GIIM Feature: gene Location: 154-1662 bp Ori: OUY73718.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 412-1144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 412 -1144 bp Feature: domain Description: GIIM Note: maturase Location: 1219-1417 bp Feature: domain Description: GIIM Note: maturase Location: 12 19-1417 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MOSS01000283.1 Klebsiella pneumoniae strain H18 contig_8_1, whole genome shotgun sequence (185948 bp)
Overview 1 RT 1: 66-7447 bp Neighborhood of RT #1 [66, 7464] PRK09692 RVT-UG4 FimD FimC Feature: gene Location: 66-1304 bp Feature: domain Description: PRK09692 Location: 72-1254 bp Feature: domain Description: PRK09692 Location: 72-1254 bp Feature: gene Location: 1981-4062 bp Ori: OUY72201.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2392-2836 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 23 92-283 6 bp Feature: gene Location: 4059-6653 bp Ori: OUY72202.1 Feature: domain Description: FimD Location: 4101-6642 bp Feature: domain Description: FimD Location: 4101-6642 bp Feature: gene Location: 6700-7464 bp Ori: OUY72203.1 Feature: domain Description: FimC Location: 6745-7447 bp Feature: domain Description: FimC Location: 6745-7447 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG4, FimD (COG3188), FimC (COG3121)