myRT

myRT report for GCA_002174075.1_ASM217407v1

Download annotations/find similar RTs

Seq: MOST01000162.1 Klebsiella pneumoniae strain H15 contig_6_1, whole genome shotgun sequence (185901 bp)
Overview 1 RT 1: 1-7400 bp Neighborhood of RT #1 [1, 7417] PRK09692 RVT-UG4 FimD FimC Feature: gene Location: 1-1257 bp Feature: domain Description: PRK09692 Location: 10-1207 bp Feature: domain Description: PRK09692 Location: 1 0-1 207 bp Feature: gene Location: 1934-4015 bp Ori: OUY80540.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2345-2789 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2345-2789 bp Feature: gene Location: 4012-6606 bp Ori: OUY80541.1 Feature: domain Description: FimD Location: 4054-6595 bp Feature: domain Description: FimD Location: 4054-6595 bp Feature: gene Location: 6653-7417 bp Ori: OUY80542.1 Feature: domain Description: FimC Location: 6698-7400 bp Feature: domain Description: FimC Location: 6698-7400 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: MOST01000089.1 Klebsiella pneumoniae strain H15 contig_35_1, whole genome shotgun sequence (17667 bp)
Overview 1 RT 1: 14062-17233 bp Neighborhood of RT #1 [14062, 17235] PRK10276 RVT-GII InsA DDE_Tnp_IS1 Feature: gene Location: 14062-14493 bp Ori: OUY82052.1 Feature: domain Description: PRK10276 Location: 14113-14476 bp Feature: domain Description: PRK102 76 Location: 14113-14476 bp Feature: gene Location: 15070-15264 bp Feature: gene Location: 15376-16386 bp Ori: OUY82053.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15382-15994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15382 -15994 bp Feature: gene Location: 16538-16813 bp Ori: OUY82054.1 Feature: domain Description: InsA Location: 16544-16805 bp Feature: domain Description: InsA Location: 16544-16805 bp Feature: gene Location: 16732-17235 bp Ori: OUY82055.1 Feature: domain Description: DDE_Tnp_IS1 Location: 16843-17233 bp Feature: domain Description: DDE_Tnp_IS1 Location: 16843-172 33 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, InsA (COG3677), DDE_Tnp_IS1 (pfam03400)