myRT

myRT report for GCA_002174515.1_ASM217451v1

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Seq: NGVX01000176.1 Shigella flexneri strain FC1607 NODE_176_length_5950_cov_26.6146_ID_351, whole genome shotgun sequence (5950 bp)
Overview 1 RT 1: 100-2745 bp Neighborhood of RT #1 [100, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 100-279 bp Feature: domain Description: DDE_Tnp_IS66 Location: 106-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 06-262 bp Feature: gene Location: 276-730 bp Feature: gene Location: 804-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951 -1 605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1 683-1 905 bp Feature: gene Location: 2053-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 21 1 0-2221 bp Feature: gene Location: 2274-2756 bp Feature: domain Description: COG3547 Location: 2292-2745 bp Feature: domain Description: COG3547 Location: 2292-2745 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: NGVX01000158.1 Shigella flexneri strain FC1607 NODE_158_length_7949_cov_25.7255_ID_315, whole genome shotgun sequence (7949 bp)
Overview 1 RT 1: 291-1268 bp Neighborhood of RT #1 [291, 1268] RVT-GII PHA02517 Feature: gene Location: 291-469 bp Feature: gene Location: 563-802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 569-776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 569-776 bp Feature: gene Location: 949-1158 bp Feature: domain Description: PHA02517 Location: 1042-1114 bp Feature: domain Description: PHA02 517 Location: 1042 -1114 bp Feature: gene Location: 1081-1268 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PHA02517 (putative transposase OrfB; Reviewed)

Seq: NGVX01000250.1 Shigella flexneri strain FC1607 NODE_250_length_2272_cov_116.183_ID_499, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2272 bp Neighborhood of RT #1 [93, 2272] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 66-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1173 -13 71 bp Feature: gene Location: 1570-1995 bp Feature: gene Location: 1910-2272 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NGVX01000202.1 Shigella flexneri strain FC1607 NODE_202_length_4151_cov_44.5531_ID_403, whole genome shotgun sequence (4151 bp)
Overview 1 RT 1: 132-1505 bp Neighborhood of RT #1 [132, 1507] RVT-GII GIIM DDE_Tnp_IS66_C Feature: gene Location: 132-935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 432-927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 32-927 bp Feature: gene Location: 910-1314 bp Feature: domain Description: GIIM Note: maturase Location: 1021-1240 bp Feature: domain Description: GIIM Note: maturase Location: 1021-124 0 bp Feature: gene Location: 1418-1507 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1430-1505 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 14 30-1505 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_IS66_C (pfam13817), GIIM (pfam08388)