myRT

myRT report for GCA_002174525.1_ASM217452v1

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Seq: NGVW01000178.1 Shigella flexneri strain FC1481 NODE_178_length_6029_cov_32.3243_ID_355, whole genome shotgun sequence (6029 bp)
Overview 1 RT 1: 179-2824 bp Neighborhood of RT #1 [179, 2835] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 179-358 bp Feature: domain Description: DDE_Tnp_IS66 Location: 185-341 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 85-341 bp Feature: gene Location: 355-809 bp Feature: gene Location: 883-2061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1030-1684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 030-1 684 bp Feature: domain Description: GIIM Note: maturase Location: 1762-1984 bp Feature: domain Description: GIIM Note: maturase Location: 1 762-1 984 bp Feature: gene Location: 2132-2323 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2189-2300 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 21 89-2300 bp Feature: gene Location: 2353-2835 bp Feature: domain Description: COG3547 Location: 2371-2824 bp Feature: domain Description: COG3547 Location: 2371 -2824 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: NGVW01000256.1 Shigella flexneri strain FC1481 NODE_256_length_2272_cov_143.232_ID_511, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2272 bp Neighborhood of RT #1 [93, 2272] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: gene Location: 1570-1995 bp Feature: gene Location: 1910-2272 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NGVW01000154.1 Shigella flexneri strain FC1481 NODE_154_length_8402_cov_34.7874_ID_307, whole genome shotgun sequence (8402 bp)
Overview 1 RT 1: 6887-8402 bp Neighborhood of RT #1 [6887, 8402] PHA02517 RVT-GII Feature: gene Location: 6887-7096 bp Feature: domain Description: PHA02517 Location: 6980-7052 bp Feature: domain Description: PHA02517 Location: 6980-7052 bp Feature: gene Location: 7041-7283 bp Feature: gene Location: 7243-7482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7249-7456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7249-7456 bp Feature: gene Location: 7576-7754 bp Feature: gene Location: 8202-8402 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII

Seq: NGVW01000191.1 Shigella flexneri strain FC1481 NODE_191_length_5498_cov_31.9518_ID_381, whole genome shotgun sequence (5498 bp)
Overview 1 RT 1: 318-3049 bp Neighborhood of RT #1 [318, 3051] PAP2_acid_phosphatase Tra5 RVT-GII GIIM DDE_Tnp_IS66_C Feature: gene Location: 318-1067 bp Feature: domain Description: PAP2_acid_phosphatase Location: 393-1047 bp Feature: domain Description: PAP2_acid_phosphatase Location: 393-104 7 bp Feature: gene Location: 1430-1663 bp Feature: domain Description: Tra5 Location: 1454-1646 bp Feature: domain Description: Tra5 Location: 14 54 -164 6 bp Feature: gene Location: 1676-2479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1976-2471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1976-24 71 bp Feature: gene Location: 2454-2858 bp Feature: domain Description: GIIM Note: maturase Location: 2565-2784 bp Feature: domain Description: GIIM Note: maturase Location: 2565-2784 bp Feature: gene Location: 2962-3051 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2974-3049 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2974 -304 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), PAP2_acid_phosphatase (cd03397)