myRT

myRT report for GCA_002174575.1_ASM217457v1

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Seq: NGVZ01000162.1 Shigella flexneri strain FC470 NODE_162_length_7693_cov_43.4602_ID_323, whole genome shotgun sequence (7693 bp)
Overview 1 RT 1: 5-3590 bp Neighborhood of RT #1 [5, 3595] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 5-91 bp Feature: gene Location: 769-2670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1036-1867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 036-1 867 bp Feature: domain Description: Intron_maturas2 Location: 1981-2239 bp Feature: domain Description: Intron_maturas2 Location: 1 981 -2239 bp Feature: domain Description: HNHc Note: nucleases Location: 2413-2575 bp Feature: domain Description: HNHc Note: nucleases Location: 241 3-2575 bp Feature: gene Location: 2819-3304 bp Feature: domain Description: PRK13732 Location: 2822-3302 bp Feature: domain Description: PRK1 3732 Location: 2822-3302 bp Feature: gene Location: 3362-3595 bp Feature: domain Description: DUF905 Location: 3392-3590 bp Feature: domain Description: DUF905 Location: 3392-3590 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NGVZ01000200.1 Shigella flexneri strain FC470 NODE_200_length_5579_cov_39.7062_ID_399, whole genome shotgun sequence (5579 bp)
Overview 1 RT 1: 1877-5093 bp Neighborhood of RT #1 [1877, 5093] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 1877-2065 bp Feature: gene Location: 2066-2236 bp Feature: gene Location: 2859-4532 bp Feature: RT Description: RVT_N Location: 2907-3150 bp Feature: RT Description: RVT_N Location: 2 907-3150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3195-3840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3195-3840 bp Feature: domain Description: GIIM Note: maturase Location: 3894-4125 bp Feature: domain Description: GIIM Note: maturase Location: 3894-412 5 bp Feature: domain Description: HNHc Note: nucleases Location: 4326-4485 bp Feature: domain Description: HNHc Note: nucleases Location: 432 6-4485 bp Feature: gene Location: 4605-4783 bp Feature: gene Location: 4902-5093 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NGVZ01000300.1 Shigella flexneri strain FC470 NODE_300_length_1818_cov_48.1879_ID_599, whole genome shotgun sequence (1818 bp)
Overview 1 RT 1: 1-1625 bp Neighborhood of RT #1 [1, 1625] RVT-GII PHA02517 Feature: gene Location: 1-201 bp Feature: gene Location: 648-826 bp Feature: gene Location: 920-1159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 926-1133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 926-113 3 bp Feature: gene Location: 1306-1515 bp Feature: domain Description: PHA02517 Location: 1399-1471 bp Feature: domain Description: PHA02517 Location: 13 99-1471 bp Feature: gene Location: 1438-1625 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII

Seq: NGVZ01000260.1 Shigella flexneri strain FC470 NODE_260_length_2852_cov_43.5151_ID_519, whole genome shotgun sequence (2852 bp)
Overview 1 RT 1: 1-2714 bp Neighborhood of RT #1 [1, 2714] DUF1472 DDE_Tnp_1 RVT-GII Feature: gene Location: 1-354 bp Feature: domain Description: DUF1472 Location: 91-355 bp Feature: domain Description: DUF14 72 Location: 91-355 bp Feature: gene Location: 525-1307 bp Feature: domain Description: DDE_Tnp_1 Location: 531-1239 bp Feature: domain Description: DDE_Tnp_1 Location: 531-1239 bp Feature: gene Location: 1240-1953 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1441-1927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 4 1-1927 bp Feature: gene Location: 2047-2714 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DUF1472 (pfam07339), DDE_Tnp_1 (pfam01609)

Seq: NGVZ01000350.1 Shigella flexneri strain FC470 NODE_350_length_1065_cov_52.5963_ID_699, whole genome shotgun sequence (1065 bp)
Overview 1 RT 1: 94-889 bp Neighborhood of RT #1 [94, 894] RVT-GII Feature: gene Location: 94-894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 394-889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 394-889 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NGVZ01000178.1 Shigella flexneri strain FC470 NODE_178_length_6843_cov_53.4101_ID_355, whole genome shotgun sequence (6843 bp)
Overview 1 RT 1: 4093-6826 bp Neighborhood of RT #1 [4093, 6843] COG3547 DDE_Tnp_IS66_C RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 4093-4575 bp Feature: domain Description: COG3547 Location: 4111-4564 bp Feature: domain Description: COG3547 Location: 4111-456 4 bp Feature: gene Location: 4605-4796 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4662-4773 bp Feature: domain Description: DDE_Tnp_IS6 6 _C Location: 46 6 2-4773 bp Feature: gene Location: 4867-6045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5014-5668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5014-56 6 8 bp Feature: domain Description: GIIM Note: maturase Location: 5746-5968 bp Feature: domain Description: GIIM Note: maturase Location: 5746 -596 8 bp Feature: gene Location: 6095-6514 bp Feature: gene Location: 6571-6843 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6667-6826 bp Feature: domain Description: DDE_Tnp_IS6 6 Location: 6 6 6 7-6 826 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)