myRT

myRT report for GCA_002174625.1_ASM217462v1

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Seq: NGWA01000175.1 Shigella sonnei strain FC1659 NODE_175_length_6063_cov_57.9572_ID_349, whole genome shotgun sequence (6063 bp)
Overview 1 RT 1: 213-2858 bp Neighborhood of RT #1 [213, 2869] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 213-392 bp Feature: domain Description: DDE_Tnp_IS66 Location: 219-375 bp Feature: domain Description: DDE_Tnp_IS66 Location: 21 9-375 bp Feature: gene Location: 389-843 bp Feature: gene Location: 917-2095 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1064-1718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 064-1 71 8 bp Feature: domain Description: GIIM Note: maturase Location: 1796-2018 bp Feature: domain Description: GIIM Note: maturase Location: 1 796-201 8 bp Feature: gene Location: 2166-2357 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2223-2334 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2223-2334 bp Feature: gene Location: 2387-2869 bp Feature: domain Description: COG3547 Location: 2405-2858 bp Feature: domain Description: COG3547 Location: 2405-2858 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: NGWA01000251.1 Shigella sonnei strain FC1659 NODE_251_length_2272_cov_120.328_ID_501, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2272 bp Neighborhood of RT #1 [93, 2272] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: gene Location: 1570-1995 bp Feature: gene Location: 1910-2272 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NGWA01000258.1 Shigella sonnei strain FC1659 NODE_258_length_2113_cov_53.4791_ID_515, whole genome shotgun sequence (2113 bp)
Overview 1 RT 1: 1-1626 bp Neighborhood of RT #1 [1, 1626] RVT-GII PHA02517 Feature: gene Location: 1-201 bp Feature: gene Location: 649-827 bp Feature: gene Location: 921-1160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 927-1134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 927-113 4 bp Feature: gene Location: 1307-1516 bp Feature: domain Description: PHA02517 Location: 1400-1472 bp Feature: domain Description: PHA02517 Location: 1400-1472 bp Feature: gene Location: 1439-1626 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII

Seq: NGWA01000314.1 Shigella sonnei strain FC1659 NODE_314_length_1111_cov_58.3211_ID_627, whole genome shotgun sequence (1111 bp)
Overview 1 RT 1: 1-975 bp Neighborhood of RT #1 [1, 983] group_II_RT_mat RVT-GII Feature: gene Location: 1-205 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 19-205 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 19-205 bp Feature: gene Location: 180-983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 480-975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 80-975 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII