myRT

myRT report for GCA_002174875.1_ASM217487v1

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Seq: MTCQ01000059.1 Pseudomonas syringae pv. actinidiae strain C3 BV319_59, whole genome shotgun sequence (37545 bp)
Overview 1 RT 1: 1219-7182 bp Neighborhood of RT #1 [1219, 7190] DUF2625 RVT-GII Intron_maturas2 HNHc Top1 modC_ABC Feature: gene Location: 1219-1854 bp Ori: OSO77515.1 Feature: domain Description: DUF2625 Location: 1231-1819 bp Feature: domain Description: DUF2625 Location: 1 231 -1 81 9 bp Feature: gene Location: 2292-4127 bp Ori: OSO77516.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2553-3366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2553-3366 bp Feature: domain Description: Intron_maturas2 Location: 3462-3777 bp Feature: domain Description: Intron_maturas2 Location: 3462-3777 bp Feature: domain Description: HNHc Note: nucleases Location: 3900-4065 bp Feature: domain Description: HNHc Note: nucleases Location: 3900-4065 bp Feature: gene Location: 4958-6013 bp Ori: OSO77517.1 Feature: domain Description: Top1 Location: 4991-6005 bp Feature: domain Description: Top1 Location: 4991 -6005 bp Feature: gene Location: 6102-7190 bp Ori: OSO77518.1 Gene: cysA_1 Feature: domain Description: modC_ABC Location: 6117-7182 bp Feature: domain Description: modC_ABC Location: 61 1 7-71 82 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2625 (pfam10946), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Top1 (COG3569), modC_ABC (TIGR02142)

Seq: MTCQ01000041.1 Pseudomonas syringae pv. actinidiae strain C3 BV319_41, whole genome shotgun sequence (48412 bp)
Overview 1 RT 1: 41912-48293 bp Neighborhood of RT #1 [41912, 48334] trans_reg_C ComA-like_MBL-fold RVT-Retrons COG3666 DDE_Tnp_1_6 Feature: gene Location: 41912-42235 bp Ori: OSO78243.1 Gene: ctrA Feature: domain Description: trans_reg_C Location: 41936-42146 bp Feature: domain Description: trans_reg_C Location: 41936-42 146 bp Feature: gene Location: 43042-44460 bp Ori: OSO78244.1 Feature: domain Description: ComA-like_MBL-fold Location: 43591-44077 bp Feature: domain Description: ComA-like_MBL-fold Location: 43591-44077 bp Feature: gene Location: 44904-46613 bp Ori: OSO78245.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45057-45654 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45057-45654 bp Feature: gene Location: 47111-48334 bp Ori: OSO78246.1 Feature: domain Description: COG3666 Location: 47153-47594 bp Feature: domain Description: COG3666 Location: 47153-47594 bp Feature: domain Description: DDE_Tnp_1_6 Location: 48071-48293 bp Feature: domain Description: DDE_Tnp_1_6 Location: 48071-482 93 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trans_reg_C (cd00383), ComA-like_MBL-fold (cd07731), RVT-Retrons, COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751)

Seq: MTCQ01000242.1 Pseudomonas syringae pv. actinidiae strain C3 BV319_242, whole genome shotgun sequence (1760 bp)
Overview 1 RT 1: 489-1650 bp Neighborhood of RT #1 [489, 1757] RVT-GII GIIM Feature: gene Location: 489-1757 bp Ori: OSO75405.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 693-1350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 693 -13 50 bp Feature: domain Description: GIIM Note: maturase Location: 1428-1650 bp Feature: domain Description: GIIM Note: maturase Location: 1428-1650 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTCQ01000188.1 Pseudomonas syringae pv. actinidiae strain C3 BV319_188, whole genome shotgun sequence (4951 bp)
Overview 1 RT 1: 1607-3879 bp Neighborhood of RT #1 [1607, 4631] UvrD_C RVT-UG9 Feature: gene Location: 1607-2551 bp Feature: gene Location: 2912-3634 bp Ori: OSO75577.1 Feature: domain Description: UvrD_C Location: 3368-3563 bp Feature: domain Description: UvrD_C Location: 3368-3563 bp Feature: gene Location: 3600-4631 bp Ori: OSO75578.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3603-3879 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3603-3879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD_C (pfam13361), RVT-UG9

Seq: MTCQ01000304.1 Pseudomonas syringae pv. actinidiae strain C3 BV319_304, whole genome shotgun sequence (643 bp)
Overview 1 RT 1: 142-562 bp Neighborhood of RT #1 [142, 603] RVT-GII Feature: gene Location: 142-603 bp Ori: OSO75338.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 148-562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 148-5 62 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII