myRT

myRT report for GCA_002174895.1_ASM217489v1

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Seq: MTHL01000251.1 Pseudomonas syringae pv. actinidiae strain C12 BV322_251, whole genome shotgun sequence (1692 bp)
Overview 1 RT 1: 4-1165 bp Neighborhood of RT #1 [4, 1272] RVT-GII GIIM Feature: gene Location: 4-1272 bp Ori: OSR30629.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208-865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208-865 bp Feature: domain Description: GIIM Note: maturase Location: 943-1165 bp Feature: domain Description: GIIM Note: maturase Location: 943-1 1 65 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTHL01000231.1 Pseudomonas syringae pv. actinidiae strain C12 BV322_231, whole genome shotgun sequence (2101 bp)
Overview 1 RT 1: 116-749 bp Neighborhood of RT #1 [116, 1330] RVT-Retrons Feature: gene Location: 116-1330 bp Ori: OSR30754.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 152-749 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 152 -749 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: MTHL01000242.1 Pseudomonas syringae pv. actinidiae strain C12 BV322_242, whole genome shotgun sequence (1872 bp)
Overview 1 RT 1: 85-1195 bp Neighborhood of RT #1 [85, 1368] RVT-GII GIIM Feature: gene Location: 85-1368 bp Ori: OSR30675.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 325-940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 25-940 bp Feature: domain Description: GIIM Note: maturase Location: 985-1195 bp Feature: domain Description: GIIM Note: maturase Location: 985-1195 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTHL01000246.1 Pseudomonas syringae pv. actinidiae strain C12 BV322_246, whole genome shotgun sequence (1804 bp)
Overview 1 RT 1: 381-1614 bp Neighborhood of RT #1 [381, 1748] RVT-GII GIIM Feature: gene Location: 381-1748 bp Ori: OSR30652.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 714-1329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 714 -1329 bp Feature: domain Description: GIIM Note: maturase Location: 1386-1614 bp Feature: domain Description: GIIM Note: maturase Location: 1386-1614 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTHL01000057.1 Pseudomonas syringae pv. actinidiae strain C12 BV322_57, whole genome shotgun sequence (38154 bp)
Overview 1 RT 1: 55-7791 bp Neighborhood of RT #1 [55, 7799] Tra5 DUF2625 RVT-GII Intron_maturas2 HNHc Top1 modC_ABC Feature: gene Location: 55-687 bp Ori: OSR37433.1 Feature: domain Description: Tra5 Location: 58-538 bp Feature: domain Description: Tra5 Location: 5 8-5 38 bp Feature: gene Location: 1828-2463 bp Ori: OSR37434.1 Feature: domain Description: DUF2625 Location: 1840-2428 bp Feature: domain Description: DUF2625 Location: 1840-2428 bp Feature: gene Location: 2901-4736 bp Ori: OSR37435.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3162-3975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3162-3975 bp Feature: domain Description: Intron_maturas2 Location: 4071-4386 bp Feature: domain Description: Intron_maturas2 Location: 4071-4386 bp Feature: domain Description: HNHc Note: nucleases Location: 4509-4674 bp Feature: domain Description: HNHc Note: nucleases Location: 45 09-4674 bp Feature: gene Location: 5567-6622 bp Ori: OSR37436.1 Feature: domain Description: Top1 Location: 5600-6614 bp Feature: domain Description: Top1 Location: 5 600-6614 bp Feature: gene Location: 6711-7799 bp Ori: OSR37437.1 Gene: cysA_1 Feature: domain Description: modC_ABC Location: 6726-7791 bp Feature: domain Description: modC_ABC Location: 6726-7791 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), DUF2625 (pfam10946), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Top1 (COG3569), modC_ABC (TIGR02142)

Seq: MTHL01000211.1 Pseudomonas syringae pv. actinidiae strain C12 BV322_211, whole genome shotgun sequence (3071 bp)
Overview 1 RT 1: 321-2872 bp Neighborhood of RT #1 [321, 2931] RVT-UG9 PRK14975 Feature: gene Location: 321-1391 bp Ori: OSR30928.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 324-600 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 324-6 00 bp Feature: gene Location: 1384-2931 bp Ori: OSR30929.1 Gene: polA_2 Feature: domain Description: PRK14975 Location: 2152-2872 bp Feature: domain Description: PRK14975 Location: 2152-2872 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG9, PRK14975 (bifunctional 3'-5' exonuclease/DNA polymerase; Provisional)