myRT

myRT report for GCA_002174905.1_ASM217490v1

Download annotations/find similar RTs

Seq: MTHJ01000258.1 Pseudomonas syringae pv. actinidiae strain C10 BV320_258, whole genome shotgun sequence (1493 bp)
Overview 1 RT 1: 222-1383 bp Neighborhood of RT #1 [222, 1490] RVT-GII GIIM Feature: gene Location: 222-1490 bp Ori: OSR30539.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 426-1083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 426-1 083 bp Feature: domain Description: GIIM Note: maturase Location: 1161-1383 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 61 -1 383 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTHJ01000059.1 Pseudomonas syringae pv. actinidiae strain C10 BV320_59, whole genome shotgun sequence (38183 bp)
Overview 1 RT 1: 55-7791 bp Neighborhood of RT #1 [55, 7799] Tra5 DUF2625 RVT-GII Intron_maturas2 HNHc Top1 modC_ABC Feature: gene Location: 55-687 bp Ori: OSR36233.1 Feature: domain Description: Tra5 Location: 58-538 bp Feature: domain Description: Tra5 Location: 58-538 bp Feature: gene Location: 1828-2463 bp Ori: OSR36234.1 Feature: domain Description: DUF2625 Location: 1840-2428 bp Feature: domain Description: DUF2 62 5 Location: 1840-2 42 8 bp Feature: gene Location: 2901-4736 bp Ori: OSR36235.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3162-3975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3162 -3975 bp Feature: domain Description: Intron_maturas2 Location: 4071-4386 bp Feature: domain Description: Intron_maturas2 Location: 4071-4386 bp Feature: domain Description: HNHc Note: nucleases Location: 4509-4674 bp Feature: domain Description: HNHc Note: nucleases Location: 4509-4674 bp Feature: gene Location: 5567-6622 bp Ori: OSR36236.1 Feature: domain Description: Top1 Location: 5600-6614 bp Feature: domain Description: Top1 Location: 5600-6614 bp Feature: gene Location: 6711-7799 bp Ori: OSR36237.1 Gene: cysA_1 Feature: domain Description: modC_ABC Location: 6726-7791 bp Feature: domain Description: modC_ABC Location: 672 6-7791 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), DUF2625 (pfam10946), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Top1 (COG3569), modC_ABC (TIGR02142)

Seq: MTHJ01000210.1 Pseudomonas syringae pv. actinidiae strain C10 BV320_210, whole genome shotgun sequence (3092 bp)
Overview 1 RT 1: 321-2872 bp Neighborhood of RT #1 [321, 2931] RVT-UG9 PRK14975 Feature: gene Location: 321-1391 bp Ori: OSR30821.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 324-600 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3 24-600 bp Feature: gene Location: 1384-2931 bp Ori: OSR30822.1 Gene: polA_2 Feature: domain Description: PRK14975 Location: 2152-2872 bp Feature: domain Description: PRK14975 Location: 2152-2872 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG9, PRK14975 (bifunctional 3'-5' exonuclease/DNA polymerase; Provisional)

Seq: MTHJ01000231.1 Pseudomonas syringae pv. actinidiae strain C10 BV320_231, whole genome shotgun sequence (2091 bp)
Overview 1 RT 1: 116-749 bp Neighborhood of RT #1 [116, 1708] RVT-Retrons Feature: gene Location: 116-1708 bp Ori: OSR30674.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 152-749 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 152-74 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: MTHJ01000241.1 Pseudomonas syringae pv. actinidiae strain C10 BV320_241, whole genome shotgun sequence (1800 bp)
Overview 1 RT 1: 377-1610 bp Neighborhood of RT #1 [377, 1744] RVT-GII GIIM Feature: gene Location: 377-1744 bp Ori: OSR30616.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 710-1325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 710-1325 bp Feature: domain Description: GIIM Note: maturase Location: 1382-1610 bp Feature: domain Description: GIIM Note: maturase Location: 1382-1610 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)