myRT

myRT report for GCA_002174925.1_ASM217492v1

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Seq: MTHM01000246.1 Pseudomonas syringae pv. actinidiae strain C13 BV323_246, whole genome shotgun sequence (1692 bp)
Overview 1 RT 1: 421-1582 bp Neighborhood of RT #1 [421, 1689] RVT-GII GIIM Feature: gene Location: 421-1689 bp Ori: OSR47417.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 625-1282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 625-1 282 bp Feature: domain Description: GIIM Note: maturase Location: 1360-1582 bp Feature: domain Description: GIIM Note: maturase Location: 1 360-1 582 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTHM01000208.1 Pseudomonas syringae pv. actinidiae strain C13 BV323_208, whole genome shotgun sequence (3071 bp)
Overview 1 RT 1: 321-2872 bp Neighborhood of RT #1 [321, 2931] RVT-UG9 PRK14975 Feature: gene Location: 321-1391 bp Ori: OSR47607.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 324-600 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 32 4-600 bp Feature: gene Location: 1384-2931 bp Ori: OSR47608.1 Gene: polA_2 Feature: domain Description: PRK14975 Location: 2152-2872 bp Feature: domain Description: PRK14975 Location: 2 152 -2 872 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG9, PRK14975 (bifunctional 3'-5' exonuclease/DNA polymerase; Provisional)

Seq: MTHM01000228.1 Pseudomonas syringae pv. actinidiae strain C13 BV323_228, whole genome shotgun sequence (2091 bp)
Overview 1 RT 1: 116-749 bp Neighborhood of RT #1 [116, 1708] RVT-Retrons Feature: gene Location: 116-1708 bp Ori: OSR47494.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 152-749 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 152-749 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: MTHM01000239.1 Pseudomonas syringae pv. actinidiae strain C13 BV323_239, whole genome shotgun sequence (1800 bp)
Overview 1 RT 1: 377-1610 bp Neighborhood of RT #1 [377, 1744] RVT-GII GIIM Feature: gene Location: 377-1744 bp Ori: OSR47440.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 710-1325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 710-1325 bp Feature: domain Description: GIIM Note: maturase Location: 1382-1610 bp Feature: domain Description: GIIM Note: maturase Location: 1382-1610 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTHM01000057.1 Pseudomonas syringae pv. actinidiae strain C13 BV323_57, whole genome shotgun sequence (38145 bp)
Overview 1 RT 1: 55-7791 bp Neighborhood of RT #1 [55, 7799] Tra5 DUF2625 RVT-GII Intron_maturas2 HNHc Top1 modC_ABC Feature: gene Location: 55-687 bp Ori: OSR51889.1 Feature: domain Description: Tra5 Location: 58-538 bp Feature: domain Description: Tra5 Location: 5 8-5 38 bp Feature: gene Location: 1828-2463 bp Ori: OSR51890.1 Feature: domain Description: DUF2625 Location: 1840-2428 bp Feature: domain Description: DUF2625 Location: 1840-2428 bp Feature: gene Location: 2901-4736 bp Ori: OSR51891.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3162-3975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3162-3975 bp Feature: domain Description: Intron_maturas2 Location: 4071-4386 bp Feature: domain Description: Intron_maturas2 Location: 4071-4386 bp Feature: domain Description: HNHc Note: nucleases Location: 4509-4674 bp Feature: domain Description: HNHc Note: nucleases Location: 45 09-4674 bp Feature: gene Location: 5567-6622 bp Ori: OSR51892.1 Feature: domain Description: Top1 Location: 5600-6614 bp Feature: domain Description: Top1 Location: 5 600-6614 bp Feature: gene Location: 6711-7799 bp Ori: OSR51893.1 Gene: cysA_1 Feature: domain Description: modC_ABC Location: 6726-7791 bp Feature: domain Description: modC_ABC Location: 6726-7791 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), DUF2625 (pfam10946), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Top1 (COG3569), modC_ABC (TIGR02142)