myRT

myRT report for GCA_002174935.1_ASM217493v1

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Seq: MTHK01000205.1 Pseudomonas syringae pv. actinidiae strain C11 BV321_205, whole genome shotgun sequence (3071 bp)
Overview 1 RT 1: 321-2872 bp Neighborhood of RT #1 [321, 2931] RVT-UG9 PRK14975 Feature: gene Location: 321-1391 bp Ori: OSR30946.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 324-600 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 324-600 bp Feature: gene Location: 1384-2931 bp Ori: OSR30947.1 Gene: polA_2 Feature: domain Description: PRK14975 Location: 2152-2872 bp Feature: domain Description: PRK1 4975 Location: 21 52-2872 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG9, PRK14975 (bifunctional 3'-5' exonuclease/DNA polymerase; Provisional)

Seq: MTHK01000224.1 Pseudomonas syringae pv. actinidiae strain C11 BV321_224, whole genome shotgun sequence (2101 bp)
Overview 1 RT 1: 116-749 bp Neighborhood of RT #1 [116, 1330] RVT-Retrons Feature: gene Location: 116-1330 bp Ori: OSR30771.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 152-749 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 152 -749 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: MTHK01000232.1 Pseudomonas syringae pv. actinidiae strain C11 BV321_232, whole genome shotgun sequence (1872 bp)
Overview 1 RT 1: 505-1615 bp Neighborhood of RT #1 [505, 1788] RVT-GII GIIM Feature: gene Location: 505-1788 bp Ori: OSR30716.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 745-1360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 745-13 60 bp Feature: domain Description: GIIM Note: maturase Location: 1405-1615 bp Feature: domain Description: GIIM Note: maturase Location: 1405-1615 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTHK01000236.1 Pseudomonas syringae pv. actinidiae strain C11 BV321_236, whole genome shotgun sequence (1800 bp)
Overview 1 RT 1: 377-1610 bp Neighborhood of RT #1 [377, 1744] RVT-GII GIIM Feature: gene Location: 377-1744 bp Ori: OSR30686.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 710-1325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 710-1325 bp Feature: domain Description: GIIM Note: maturase Location: 1382-1610 bp Feature: domain Description: GIIM Note: maturase Location: 1382-1610 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTHK01000258.1 Pseudomonas syringae pv. actinidiae strain C11 BV321_258, whole genome shotgun sequence (1493 bp)
Overview 1 RT 1: 4-1165 bp Neighborhood of RT #1 [4, 1272] RVT-GII GIIM Feature: gene Location: 4-1272 bp Ori: OSR30581.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208-865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208-865 bp Feature: domain Description: GIIM Note: maturase Location: 943-1165 bp Feature: domain Description: GIIM Note: maturase Location: 943-1165 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTHK01000057.1 Pseudomonas syringae pv. actinidiae strain C11 BV321_57, whole genome shotgun sequence (37804 bp)
Overview 1 RT 1: 105-7439 bp Neighborhood of RT #1 [105, 7447] DUF2625 RVT-GII Intron_maturas2 HNHc Top1 modC_ABC Feature: gene Location: 105-335 bp Feature: gene Location: 1476-2111 bp Ori: OSR36960.1 Feature: domain Description: DUF2625 Location: 1488-2076 bp Feature: domain Description: DUF26 25 Location: 1488-2076 bp Feature: gene Location: 2549-4384 bp Ori: OSR36961.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2810-3623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2810-36 23 bp Feature: domain Description: Intron_maturas2 Location: 3719-4034 bp Feature: domain Description: Intron_maturas2 Location: 3719-4034 bp Feature: domain Description: HNHc Note: nucleases Location: 4157-4322 bp Feature: domain Description: HNHc Note: nucleases Location: 4157-4322 bp Feature: gene Location: 5215-6270 bp Ori: OSR36962.1 Feature: domain Description: Top1 Location: 5248-6262 bp Feature: domain Description: Top1 Location: 5248-6 26 2 bp Feature: gene Location: 6359-7447 bp Ori: OSR36963.1 Gene: cysA_1 Feature: domain Description: modC_ABC Location: 6374-7439 bp Feature: domain Description: modC_ABC Location: 6 374-7439 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2625 (pfam10946), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Top1 (COG3569), modC_ABC (TIGR02142)