myRT

myRT report for GCA_002174975.1_ASM217497v1

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Seq: MTHO01000056.1 Pseudomonas syringae pv. actinidiae strain C15 BV325_56, whole genome shotgun sequence (37804 bp)
Overview 1 RT 1: 105-7439 bp Neighborhood of RT #1 [105, 7447] DUF2625 RVT-GII Intron_maturas2 HNHc Top1 modC_ABC Feature: gene Location: 105-335 bp Feature: gene Location: 1476-2111 bp Ori: OSR57074.1 Feature: domain Description: DUF2625 Location: 1488-2076 bp Feature: domain Description: DUF2625 Location: 1 488-2076 bp Feature: gene Location: 2549-4384 bp Ori: OSR57075.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2810-3623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 281 0-3623 bp Feature: domain Description: Intron_maturas2 Location: 3719-4034 bp Feature: domain Description: Intron_maturas2 Location: 371 9-4034 bp Feature: domain Description: HNHc Note: nucleases Location: 4157-4322 bp Feature: domain Description: HNHc Note: nucleases Location: 41 57-4322 bp Feature: gene Location: 5215-6270 bp Ori: OSR57076.1 Feature: domain Description: Top1 Location: 5248-6262 bp Feature: domain Description: Top1 Location: 5248-6262 bp Feature: gene Location: 6359-7447 bp Ori: OSR57077.1 Gene: cysA_1 Feature: domain Description: modC_ABC Location: 6374-7439 bp Feature: domain Description: modC_ABC Location: 6374-7439 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2625 (pfam10946), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Top1 (COG3569), modC_ABC (TIGR02142)

Seq: MTHO01000177.1 Pseudomonas syringae pv. actinidiae strain C15 BV325_177, whole genome shotgun sequence (4493 bp)
Overview 1 RT 1: 384-3382 bp Neighborhood of RT #1 [384, 4173] T6SS_HCP PRK14975 RVT-UG9 Feature: gene Location: 384-887 bp Ori: OSR48672.1 Feature: domain Description: T6SS_HCP Location: 402-804 bp Feature: domain Description: T6SS_HCP Location: 402 -804 bp Feature: gene Location: 1563-3110 bp Ori: OSR48673.1 Gene: polA_2 Feature: domain Description: PRK14975 Location: 2331-3051 bp Feature: domain Description: PRK14975 Location: 2 331-3051 bp Feature: gene Location: 3103-4173 bp Ori: OSR48674.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3106-3382 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3106-3382 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T6SS_HCP (pfam05638), PRK14975 (bifunctional 3'-5' exonuclease/DNA polymerase; Provisional), RVT-UG9

Seq: MTHO01000269.1 Pseudomonas syringae pv. actinidiae strain C15 BV325_269, whole genome shotgun sequence (1167 bp)
Overview 1 RT 1: 57-963 bp Neighborhood of RT #1 [57, 1097] RVT-GII GIIM Feature: gene Location: 57-1097 bp Ori: OSR47579.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63-678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63 -678 bp Feature: domain Description: GIIM Note: maturase Location: 735-963 bp Feature: domain Description: GIIM Note: maturase Location: 73 5-963 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTHO01000234.1 Pseudomonas syringae pv. actinidiae strain C15 BV325_234, whole genome shotgun sequence (1810 bp)
Overview 1 RT 1: 539-1700 bp Neighborhood of RT #1 [539, 1807] RVT-GII GIIM Feature: gene Location: 539-1807 bp Ori: OSR47854.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 743-1400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74 3-14 00 bp Feature: domain Description: GIIM Note: maturase Location: 1478-1700 bp Feature: domain Description: GIIM Note: maturase Location: 14 78-1700 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTHO01000231.1 Pseudomonas syringae pv. actinidiae strain C15 BV325_231, whole genome shotgun sequence (1872 bp)
Overview 1 RT 1: 85-1195 bp Neighborhood of RT #1 [85, 1368] RVT-GII GIIM Feature: gene Location: 85-1368 bp Ori: OSR47882.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 325-940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 325 -940 bp Feature: domain Description: GIIM Note: maturase Location: 985-1195 bp Feature: domain Description: GIIM Note: maturase Location: 985 -1195 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTHO01000040.1 Pseudomonas syringae pv. actinidiae strain C15 BV325_40, whole genome shotgun sequence (47107 bp)
Overview 1 RT 1: 41912-45654 bp Neighborhood of RT #1 [41912, 46613] trans_reg_C ComA-like_MBL-fold RVT-Retrons Feature: gene Location: 41912-42235 bp Ori: OSR59493.1 Gene: ctrA Feature: domain Description: trans_reg_C Location: 41936-42146 bp Feature: domain Description: trans_reg_C Location: 41936 -42146 bp Feature: gene Location: 43042-44460 bp Ori: OSR59494.1 Feature: domain Description: ComA-like_MBL-fold Location: 43591-44077 bp Feature: domain Description: ComA-like_MBL-fold Location: 43591-44077 bp Feature: gene Location: 44904-46613 bp Ori: OSR59495.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45057-45654 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45057-456 54 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trans_reg_C (cd00383), ComA-like_MBL-fold (cd07731), RVT-Retrons