myRT

myRT report for GCA_002175005.1_ASM217500v1

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Seq: MTHQ01000053.1 Pseudomonas syringae pv. actinidiae strain C17 BV327_53, whole genome shotgun sequence (38080 bp)
Overview 1 RT 1: 55-7791 bp Neighborhood of RT #1 [55, 7799] Tra5 DUF2625 RVT-GII Intron_maturas2 HNHc Top1 modC_ABC Feature: gene Location: 55-687 bp Ori: OSR72010.1 Feature: domain Description: Tra5 Location: 58-535 bp Feature: domain Description: Tra5 Location: 58-535 bp Feature: gene Location: 1828-2463 bp Ori: OSR72011.1 Feature: domain Description: DUF2625 Location: 1840-2428 bp Feature: domain Description: DUF2625 Location: 1 840-2428 bp Feature: gene Location: 2901-4736 bp Ori: OSR72012.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3162-3975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 62-3975 bp Feature: domain Description: Intron_maturas2 Location: 4071-4386 bp Feature: domain Description: Intron_maturas2 Location: 4071 -4386 bp Feature: domain Description: HNHc Note: nucleases Location: 4509-4674 bp Feature: domain Description: HNHc Note: nucleases Location: 4509-4674 bp Feature: gene Location: 5567-6622 bp Ori: OSR72013.1 Feature: domain Description: Top1 Location: 5600-6614 bp Feature: domain Description: Top1 Location: 5600-661 4 bp Feature: gene Location: 6711-7799 bp Ori: OSR72014.1 Gene: cysA_1 Feature: domain Description: modC_ABC Location: 6726-7791 bp Feature: domain Description: modC_ABC Location: 6726-7791 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), DUF2625 (pfam10946), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Top1 (COG3569), modC_ABC (TIGR02142)

Seq: MTHQ01000311.1 Pseudomonas syringae pv. actinidiae strain C17 BV327_311, whole genome shotgun sequence (912 bp)
Overview 1 RT 1: 57-759 bp Neighborhood of RT #1 [57, 893] RVT-GII GIIM Feature: gene Location: 57-893 bp Ori: OSR64336.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60-474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60-474 bp Feature: domain Description: GIIM Note: maturase Location: 531-759 bp Feature: domain Description: GIIM Note: maturase Location: 531-759 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTHQ01000256.1 Pseudomonas syringae pv. actinidiae strain C17 BV327_256, whole genome shotgun sequence (1872 bp)
Overview 1 RT 1: 505-1615 bp Neighborhood of RT #1 [505, 1788] RVT-GII GIIM Feature: gene Location: 505-1788 bp Ori: OSR64544.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 745-1360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 745-13 60 bp Feature: domain Description: GIIM Note: maturase Location: 1405-1615 bp Feature: domain Description: GIIM Note: maturase Location: 1405-1615 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTHQ01000035.1 Pseudomonas syringae pv. actinidiae strain C17 BV327_35, whole genome shotgun sequence (49021 bp)
Overview 1 RT 1: 41912-48818 bp Neighborhood of RT #1 [41912, 48967] trans_reg_C ComA-like_MBL-fold RVT-Retrons COG3666 DDE_Tnp_1_6 Tra5 Feature: gene Location: 41912-42235 bp Ori: OSR74235.1 Gene: ctrA Feature: domain Description: trans_reg_C Location: 41936-42146 bp Feature: domain Description: trans_reg_C Location: 4 1936-4 214 6 bp Feature: gene Location: 43042-44460 bp Ori: OSR74236.1 Feature: domain Description: ComA-like_MBL-fold Location: 43591-44077 bp Feature: domain Description: ComA-like_MBL-fold Location: 4 3591-4 4 077 bp Feature: gene Location: 44904-46613 bp Ori: OSR74237.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45057-45654 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4 5057-4 5654 bp Feature: gene Location: 47111-48334 bp Ori: OSR74238.1 Feature: domain Description: COG3666 Location: 47153-47594 bp Feature: domain Description: COG3666 Location: 4 7153-4 7594 bp Feature: domain Description: DDE_Tnp_1_6 Location: 48071-48293 bp Feature: domain Description: DDE_Tnp_1_6 Location: 4 8071-4 8293 bp Feature: gene Location: 48335-48967 bp Ori: OSR74239.1 Feature: domain Description: Tra5 Location: 48338-48818 bp Feature: domain Description: Tra5 Location: 4 8338-4 8818 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trans_reg_C (cd00383), ComA-like_MBL-fold (cd07731), RVT-Retrons, COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), Tra5 (COG2801)

Seq: MTHQ01000202.1 Pseudomonas syringae pv. actinidiae strain C17 BV327_202, whole genome shotgun sequence (4458 bp)
Overview 1 RT 1: 321-4027 bp Neighborhood of RT #1 [321, 4110] RVT-UG9 PRK14975 T6SS_HCP Feature: gene Location: 321-1391 bp Ori: OSR65039.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 324-600 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 324-600 bp Feature: gene Location: 1384-2931 bp Ori: OSR65040.1 Gene: polA_2 Feature: domain Description: PRK14975 Location: 2152-2872 bp Feature: domain Description: PRK14975 Location: 215 2-2872 bp Feature: gene Location: 3607-4110 bp Ori: OSR65041.1 Feature: domain Description: T6SS_HCP Location: 3625-4027 bp Feature: domain Description: T6SS_HCP Location: 3625 -4027 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG9, PRK14975 (bifunctional 3'-5' exonuclease/DNA polymerase; Provisional), T6SS_HCP (pfam05638)

Seq: MTHQ01000267.1 Pseudomonas syringae pv. actinidiae strain C17 BV327_267, whole genome shotgun sequence (1692 bp)
Overview 1 RT 1: 421-1582 bp Neighborhood of RT #1 [421, 1689] RVT-GII GIIM Feature: gene Location: 421-1689 bp Ori: OSR64480.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 625-1282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 25-1282 bp Feature: domain Description: GIIM Note: maturase Location: 1360-1582 bp Feature: domain Description: GIIM Note: maturase Location: 136 0-1582 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)