myRT

myRT report for GCA_002175055.1_ASM217505v1

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Seq: MTHT01000042.1 Pseudomonas syringae pv. actinidiae strain C26 BV330_42, whole genome shotgun sequence (47058 bp)
Overview 1 RT 1: 362-5080 bp Neighborhood of RT #1 [362, 5169] RVT-Retrons ComA-like_MBL-fold trans_reg_C Feature: gene Location: 362-2071 bp Ori: OSR91418.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 515-1112 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51 5-1 1 1 2 bp Feature: gene Location: 2594-4039 bp Ori: OSR91419.1 Feature: domain Description: ComA-like_MBL-fold Location: 3143-3629 bp Feature: domain Description: ComA-like_MBL-fold Location: 31 43-3629 bp Feature: gene Location: 4846-5169 bp Ori: OSR91420.1 Gene: ctrA Feature: domain Description: trans_reg_C Location: 4870-5080 bp Feature: domain Description: trans_reg_C Location: 4870-5080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, ComA-like_MBL-fold (cd07731), trans_reg_C (cd00383)

Seq: MTHT01000239.1 Pseudomonas syringae pv. actinidiae strain C26 BV330_239, whole genome shotgun sequence (1810 bp)
Overview 1 RT 1: 4-1165 bp Neighborhood of RT #1 [4, 1272] RVT-GII GIIM Feature: gene Location: 4-1272 bp Ori: OSR82002.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208-865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 08-865 bp Feature: domain Description: GIIM Note: maturase Location: 943-1165 bp Feature: domain Description: GIIM Note: maturase Location: 943-1165 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTHT01000212.1 Pseudomonas syringae pv. actinidiae strain C26 BV330_212, whole genome shotgun sequence (2934 bp)
Overview 1 RT 1: 119-1938 bp Neighborhood of RT #1 [119, 2729] PRK14975 RVT-UG9 Feature: gene Location: 119-1666 bp Ori: OSR82262.1 Gene: polA_2 Feature: domain Description: PRK14975 Location: 887-1607 bp Feature: domain Description: PRK14975 Location: 887-1607 bp Feature: gene Location: 1659-2729 bp Ori: OSR82263.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 1662-1938 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 1662-193 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK14975 (bifunctional 3'-5' exonuclease/DNA polymerase; Provisional), RVT-UG9

Seq: MTHT01000237.1 Pseudomonas syringae pv. actinidiae strain C26 BV330_237, whole genome shotgun sequence (1872 bp)
Overview 1 RT 1: 505-1615 bp Neighborhood of RT #1 [505, 1788] RVT-GII GIIM Feature: gene Location: 505-1788 bp Ori: OSR82013.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 745-1360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74 5-1360 bp Feature: domain Description: GIIM Note: maturase Location: 1405-1615 bp Feature: domain Description: GIIM Note: maturase Location: 14 05-1615 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTHT01000273.1 Pseudomonas syringae pv. actinidiae strain C26 BV330_273, whole genome shotgun sequence (1167 bp)
Overview 1 RT 1: 57-963 bp Neighborhood of RT #1 [57, 1097] RVT-GII GIIM Feature: gene Location: 57-1097 bp Ori: OSR81759.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63-678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63-678 bp Feature: domain Description: GIIM Note: maturase Location: 735-963 bp Feature: domain Description: GIIM Note: maturase Location: 735 -963 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTHT01000059.1 Pseudomonas syringae pv. actinidiae strain C26 BV330_59, whole genome shotgun sequence (37503 bp)
Overview 1 RT 1: 30336-36272 bp Neighborhood of RT #1 [30336, 36307] modC_ABC Top1 RVT-GII Intron_maturas2 HNHc DUF2625 Feature: gene Location: 30336-31424 bp Ori: OSR89901.1 Gene: cysA_1 Feature: domain Description: modC_ABC Location: 30351-31416 bp Feature: domain Description: modC_ABC Location: 30351-31416 bp Feature: gene Location: 31513-32568 bp Ori: OSR89902.1 Feature: domain Description: Top1 Location: 31546-32560 bp Feature: domain Description: Top1 Location: 31546 -3256 0 bp Feature: gene Location: 33399-35234 bp Ori: OSR89903.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33660-34473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 336 6 0-34473 bp Feature: domain Description: Intron_maturas2 Location: 34569-34884 bp Feature: domain Description: Intron_maturas2 Location: 3456 9-34884 bp Feature: domain Description: HNHc Note: nucleases Location: 35007-35172 bp Feature: domain Description: HNHc Note: nucleases Location: 35007-35172 bp Feature: gene Location: 35672-36307 bp Ori: OSR89904.1 Feature: domain Description: DUF2625 Location: 35684-36272 bp Feature: domain Description: DUF26 25 Location: 356 84-36 272 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT modC_ABC (TIGR02142), Top1 (COG3569), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF2625 (pfam10946)