myRT

myRT report for GCA_002175065.1_ASM217506v1

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Seq: MTHR01000180.1 Pseudomonas syringae pv. actinidiae strain C18 BV328_180, whole genome shotgun sequence (4493 bp)
Overview 1 RT 1: 384-3382 bp Neighborhood of RT #1 [384, 4173] T6SS_HCP PRK14975 RVT-UG9 Feature: gene Location: 384-887 bp Ori: OSR65866.1 Feature: domain Description: T6SS_HCP Location: 402-804 bp Feature: domain Description: T6SS_HCP Location: 402-804 bp Feature: gene Location: 1563-3110 bp Ori: OSR65867.1 Gene: polA_2 Feature: domain Description: PRK14975 Location: 2331-3051 bp Feature: domain Description: PRK1 4975 Location: 2331 -3051 bp Feature: gene Location: 3103-4173 bp Ori: OSR65868.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3106-3382 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 31 06-3382 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T6SS_HCP (pfam05638), PRK14975 (bifunctional 3'-5' exonuclease/DNA polymerase; Provisional), RVT-UG9

Seq: MTHR01000039.1 Pseudomonas syringae pv. actinidiae strain C18 BV328_39, whole genome shotgun sequence (48669 bp)
Overview 1 RT 1: 41912-48565 bp Neighborhood of RT #1 [41912, 48565] trans_reg_C ComA-like_MBL-fold RVT-Retrons COG3666 DDE_Tnp_1_6 Feature: gene Location: 41912-42235 bp Ori: OSR76424.1 Gene: ctrA Feature: domain Description: trans_reg_C Location: 41936-42146 bp Feature: domain Description: trans_reg_C Location: 41936-42 146 bp Feature: gene Location: 43042-44460 bp Ori: OSR76425.1 Feature: domain Description: ComA-like_MBL-fold Location: 43591-44077 bp Feature: domain Description: ComA-like_MBL-fold Location: 43591-44077 bp Feature: gene Location: 44904-46613 bp Ori: OSR76426.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45057-45654 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45057-45654 bp Feature: gene Location: 47111-48334 bp Ori: OSR76427.1 Feature: domain Description: COG3666 Location: 47153-47594 bp Feature: domain Description: COG3666 Location: 47153-47594 bp Feature: domain Description: DDE_Tnp_1_6 Location: 48071-48293 bp Feature: domain Description: DDE_Tnp_1_6 Location: 48071-482 93 bp Feature: gene Location: 48335-48565 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trans_reg_C (cd00383), ComA-like_MBL-fold (cd07731), RVT-Retrons, COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751)

Seq: MTHR01000234.1 Pseudomonas syringae pv. actinidiae strain C18 BV328_234, whole genome shotgun sequence (1872 bp)
Overview 1 RT 1: 85-1195 bp Neighborhood of RT #1 [85, 1368] RVT-GII GIIM Feature: gene Location: 85-1368 bp Ori: OSR64968.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 325-940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 25-940 bp Feature: domain Description: GIIM Note: maturase Location: 985-1195 bp Feature: domain Description: GIIM Note: maturase Location: 985-1195 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTHR01000273.1 Pseudomonas syringae pv. actinidiae strain C18 BV328_273, whole genome shotgun sequence (1167 bp)
Overview 1 RT 1: 57-963 bp Neighborhood of RT #1 [57, 1097] RVT-GII GIIM Feature: gene Location: 57-1097 bp Ori: OSR64604.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63-678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63-678 bp Feature: domain Description: GIIM Note: maturase Location: 735-963 bp Feature: domain Description: GIIM Note: maturase Location: 735-963 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTHR01000056.1 Pseudomonas syringae pv. actinidiae strain C18 BV328_56, whole genome shotgun sequence (37804 bp)
Overview 1 RT 1: 105-7439 bp Neighborhood of RT #1 [105, 7447] DUF2625 RVT-GII Intron_maturas2 HNHc Top1 modC_ABC Feature: gene Location: 105-335 bp Feature: gene Location: 1476-2111 bp Ori: OSR73602.1 Feature: domain Description: DUF2625 Location: 1488-2076 bp Feature: domain Description: DUF2625 Location: 1488-2076 bp Feature: gene Location: 2549-4384 bp Ori: OSR73603.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2810-3623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2810-3623 bp Feature: domain Description: Intron_maturas2 Location: 3719-4034 bp Feature: domain Description: Intron_maturas2 Location: 3719-4034 bp Feature: domain Description: HNHc Note: nucleases Location: 4157-4322 bp Feature: domain Description: HNHc Note: nucleases Location: 415 7-4322 bp Feature: gene Location: 5215-6270 bp Ori: OSR73604.1 Feature: domain Description: Top1 Location: 5248-6262 bp Feature: domain Description: Top1 Location: 5 248-6262 bp Feature: gene Location: 6359-7447 bp Ori: OSR73605.1 Gene: cysA_1 Feature: domain Description: modC_ABC Location: 6374-7439 bp Feature: domain Description: modC_ABC Location: 6374-7439 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2625 (pfam10946), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Top1 (COG3569), modC_ABC (TIGR02142)

Seq: MTHR01000254.1 Pseudomonas syringae pv. actinidiae strain C18 BV328_254, whole genome shotgun sequence (1493 bp)
Overview 1 RT 1: 4-1165 bp Neighborhood of RT #1 [4, 1272] RVT-GII GIIM Feature: gene Location: 4-1272 bp Ori: OSR64766.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208-865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208-86 5 bp Feature: domain Description: GIIM Note: maturase Location: 943-1165 bp Feature: domain Description: GIIM Note: maturase Location: 943-116 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)