myRT

myRT report for GCA_002175085.1_ASM217508v1

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Seq: MTHS01000261.1 Pseudomonas syringae pv. actinidiae strain C24 BV329_261, whole genome shotgun sequence (1167 bp)
Overview 1 RT 1: 57-963 bp Neighborhood of RT #1 [57, 1097] RVT-GII GIIM Feature: gene Location: 57-1097 bp Ori: OSR81308.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63-678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63-678 bp Feature: domain Description: GIIM Note: maturase Location: 735-963 bp Feature: domain Description: GIIM Note: maturase Location: 735-963 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTHS01000231.1 Pseudomonas syringae pv. actinidiae strain C24 BV329_231, whole genome shotgun sequence (1872 bp)
Overview 1 RT 1: 505-1615 bp Neighborhood of RT #1 [505, 1788] RVT-GII GIIM Feature: gene Location: 505-1788 bp Ori: OSR81683.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 745-1360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 745-1360 bp Feature: domain Description: GIIM Note: maturase Location: 1405-1615 bp Feature: domain Description: GIIM Note: maturase Location: 1405-1615 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTHS01000024.1 Pseudomonas syringae pv. actinidiae strain C24 BV329_24, whole genome shotgun sequence (67616 bp)
Overview 1 RT 1: 200-2444 bp Neighborhood of RT #1 [200, 2444] RVT-GII GIIM Feature: gene Location: 200-1468 bp Ori: OSR87399.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 404-1061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 404-1061 bp Feature: domain Description: GIIM Note: maturase Location: 1139-1361 bp Feature: domain Description: GIIM Note: maturase Location: 113 9-13 61 bp Feature: gene Location: 1502-1669 bp Feature: gene Location: 1728-2444 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTHS01000041.1 Pseudomonas syringae pv. actinidiae strain C24 BV329_41, whole genome shotgun sequence (48742 bp)
Overview 1 RT 1: 17-6456 bp Neighborhood of RT #1 [17, 6545] COG3666 DDE_Tnp_1_6 RVT-Retrons ComA-like_MBL-fold trans_reg_C Feature: gene Location: 17-1240 bp Ori: OSR86002.1 Feature: domain Description: COG3666 Location: 59-500 bp Feature: domain Description: COG3666 Location: 59-500 bp Feature: domain Description: DDE_Tnp_1_6 Location: 977-1199 bp Feature: domain Description: DDE_Tnp_1_6 Location: 977-1199 bp Feature: gene Location: 1738-3447 bp Ori: OSR86003.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1891-2488 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1891-24 88 bp Feature: gene Location: 3970-5415 bp Ori: OSR86004.1 Feature: domain Description: ComA-like_MBL-fold Location: 4519-5005 bp Feature: domain Description: ComA-like_MBL-fold Location: 4 519-5005 bp Feature: gene Location: 6222-6545 bp Ori: OSR86005.1 Gene: ctrA Feature: domain Description: trans_reg_C Location: 6246-6456 bp Feature: domain Description: trans_reg_C Location: 624 6-64 56 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RVT-Retrons, ComA-like_MBL-fold (cd07731), trans_reg_C (cd00383)

Seq: MTHS01000061.1 Pseudomonas syringae pv. actinidiae strain C24 BV329_61, whole genome shotgun sequence (37464 bp)
Overview 1 RT 1: 30336-36272 bp Neighborhood of RT #1 [30336, 36307] modC_ABC Top1 RVT-GII Intron_maturas2 HNHc DUF2625 Feature: gene Location: 30336-31424 bp Ori: OSR84790.1 Gene: cysA_1 Feature: domain Description: modC_ABC Location: 30351-31416 bp Feature: domain Description: modC_ABC Location: 3035 1-31416 bp Feature: gene Location: 31513-32568 bp Ori: OSR84791.1 Feature: domain Description: Top1 Location: 31546-32560 bp Feature: domain Description: Top1 Location: 315 46-325 60 bp Feature: gene Location: 33399-35234 bp Ori: OSR84792.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33660-34473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33660-34473 bp Feature: domain Description: Intron_maturas2 Location: 34569-34884 bp Feature: domain Description: Intron_maturas2 Location: 345 69-34884 bp Feature: domain Description: HNHc Note: nucleases Location: 35007-35172 bp Feature: domain Description: HNHc Note: nucleases Location: 35 007-35 172 bp Feature: gene Location: 35672-36307 bp Ori: OSR84793.1 Feature: domain Description: DUF2625 Location: 35684-36272 bp Feature: domain Description: DUF2625 Location: 35 684-36272 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT modC_ABC (TIGR02142), Top1 (COG3569), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF2625 (pfam10946)

Seq: MTHS01000191.1 Pseudomonas syringae pv. actinidiae strain C24 BV329_191, whole genome shotgun sequence (4462 bp)
Overview 1 RT 1: 362-3466 bp Neighborhood of RT #1 [362, 4257] T6SS_HCP PRK14975 RVT-UG9 Feature: gene Location: 362-865 bp Ori: OSR81890.1 Feature: domain Description: T6SS_HCP Location: 380-782 bp Feature: domain Description: T6 SS_HCP Location: 380-782 bp Feature: gene Location: 1647-3194 bp Ori: OSR81891.1 Gene: polA_2 Feature: domain Description: PRK14975 Location: 2415-3135 bp Feature: domain Description: PRK14975 Location: 2415-3135 bp Feature: gene Location: 3187-4257 bp Ori: OSR81892.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3190-3466 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3190-346 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T6SS_HCP (pfam05638), PRK14975 (bifunctional 3'-5' exonuclease/DNA polymerase; Provisional), RVT-UG9