myRT

myRT report for GCA_002175135.1_ASM217513v1

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Seq: MTHV01000214.1 Pseudomonas syringae pv. actinidiae strain C28 BV332_214, whole genome shotgun sequence (2903 bp)
Overview 1 RT 1: 175-2726 bp Neighborhood of RT #1 [175, 2785] RVT-UG9 PRK14975 Feature: gene Location: 175-1245 bp Ori: OSR97367.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 178-454 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 1 78-454 bp Feature: gene Location: 1238-2785 bp Ori: OSR97368.1 Gene: polA_2 Feature: domain Description: PRK14975 Location: 2006-2726 bp Feature: domain Description: PRK1 4975 Location: 2006-2726 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG9, PRK14975 (bifunctional 3'-5' exonuclease/DNA polymerase; Provisional)

Seq: MTHV01000262.1 Pseudomonas syringae pv. actinidiae strain C28 BV332_262, whole genome shotgun sequence (1471 bp)
Overview 1 RT 1: 4-1165 bp Neighborhood of RT #1 [4, 1272] RVT-GII GIIM Feature: gene Location: 4-1272 bp Ori: OSR95390.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208-865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 08-865 bp Feature: domain Description: GIIM Note: maturase Location: 943-1165 bp Feature: domain Description: GIIM Note: maturase Location: 943-1165 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTHV01000241.1 Pseudomonas syringae pv. actinidiae strain C28 BV332_241, whole genome shotgun sequence (1872 bp)
Overview 1 RT 1: 85-1195 bp Neighborhood of RT #1 [85, 1368] RVT-GII GIIM Feature: gene Location: 85-1368 bp Ori: OSR96213.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 325-940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 25-940 bp Feature: domain Description: GIIM Note: maturase Location: 985-1195 bp Feature: domain Description: GIIM Note: maturase Location: 985-1195 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTHV01000059.1 Pseudomonas syringae pv. actinidiae strain C28 BV332_59, whole genome shotgun sequence (37477 bp)
Overview 1 RT 1: 30334-36270 bp Neighborhood of RT #1 [30334, 36305] modC_ABC Top1 RVT-GII Intron_maturas2 HNHc DUF2625 Feature: gene Location: 30334-31422 bp Ori: OSS01821.1 Gene: cysA_1 Feature: domain Description: modC_ABC Location: 30349-31414 bp Feature: domain Description: modC_ABC Location: 3034 9-314 14 bp Feature: gene Location: 31511-32566 bp Ori: OSS01822.1 Feature: domain Description: Top1 Location: 31544-32558 bp Feature: domain Description: Top1 Location: 3154 4 -32558 bp Feature: gene Location: 33397-35232 bp Ori: OSS01823.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33658-34471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33658-34 4 71 bp Feature: domain Description: Intron_maturas2 Location: 34567-34882 bp Feature: domain Description: Intron_maturas2 Location: 34 567-34 882 bp Feature: domain Description: HNHc Note: nucleases Location: 35005-35170 bp Feature: domain Description: HNHc Note: nucleases Location: 35005-35170 bp Feature: gene Location: 35670-36305 bp Ori: OSS01824.1 Feature: domain Description: DUF2625 Location: 35682-36270 bp Feature: domain Description: DUF2625 Location: 35682-36270 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT modC_ABC (TIGR02142), Top1 (COG3569), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF2625 (pfam10946)

Seq: MTHV01000231.1 Pseudomonas syringae pv. actinidiae strain C28 BV332_231, whole genome shotgun sequence (2057 bp)
Overview 1 RT 1: 94-727 bp Neighborhood of RT #1 [94, 1308] RVT-Retrons Feature: gene Location: 94-1308 bp Ori: OSR96461.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 130-727 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 130-727 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: MTHV01000244.1 Pseudomonas syringae pv. actinidiae strain C28 BV332_244, whole genome shotgun sequence (1800 bp)
Overview 1 RT 1: 377-1610 bp Neighborhood of RT #1 [377, 1744] RVT-GII GIIM Feature: gene Location: 377-1744 bp Ori: OSR96095.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 710-1325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 710-1325 bp Feature: domain Description: GIIM Note: maturase Location: 1382-1610 bp Feature: domain Description: GIIM Note: maturase Location: 1382-16 10 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)