myRT

myRT report for GCA_002175175.1_ASM217517v1

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Seq: MTHW01000194.1 Pseudomonas syringae pv. actinidiae strain C29 BV333_194, whole genome shotgun sequence (4908 bp)
Overview 1 RT 1: 1586-3858 bp Neighborhood of RT #1 [1586, 4610] UvrD_C RVT-UG9 Feature: gene Location: 1586-2530 bp Feature: gene Location: 2891-3613 bp Ori: OSR99116.1 Feature: domain Description: UvrD_C Location: 3347-3542 bp Feature: domain Description: UvrD_C Location: 3347-3542 bp Feature: gene Location: 3579-4610 bp Ori: OSR99117.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3582-3858 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3582-3858 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD_C (pfam13361), RVT-UG9

Seq: MTHW01000244.1 Pseudomonas syringae pv. actinidiae strain C29 BV333_244, whole genome shotgun sequence (1806 bp)
Overview 1 RT 1: 4-1165 bp Neighborhood of RT #1 [4, 1272] RVT-GII GIIM Feature: gene Location: 4-1272 bp Ori: OSR98672.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208-865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 08-865 bp Feature: domain Description: GIIM Note: maturase Location: 943-1165 bp Feature: domain Description: GIIM Note: maturase Location: 943-1165 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTHW01000036.1 Pseudomonas syringae pv. actinidiae strain C29 BV333_36, whole genome shotgun sequence (48707 bp)
Overview 1 RT 1: 42253-48634 bp Neighborhood of RT #1 [42253, 48675] trans_reg_C ComA-like_MBL-fold RVT-Retrons COG3666 DDE_Tnp_1_6 Feature: gene Location: 42253-42576 bp Ori: OSS08224.1 Gene: ctrA Feature: domain Description: trans_reg_C Location: 42277-42487 bp Feature: domain Description: trans_reg_C Location: 42277-42487 bp Feature: gene Location: 43383-44801 bp Ori: OSS08225.1 Feature: domain Description: ComA-like_MBL-fold Location: 43932-44418 bp Feature: domain Description: ComA-like_MBL-fold Location: 43 93 2-44418 bp Feature: gene Location: 45245-46954 bp Ori: OSS08226.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45398-45995 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 453 98-45995 bp Feature: gene Location: 47452-48675 bp Ori: OSS08227.1 Feature: domain Description: COG3666 Location: 47494-47935 bp Feature: domain Description: COG3 666 Location: 47494-4793 5 bp Feature: domain Description: DDE_Tnp_1_6 Location: 48412-48634 bp Feature: domain Description: DDE_Tnp_1_6 Location: 48412-4863 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trans_reg_C (cd00383), ComA-like_MBL-fold (cd07731), RVT-Retrons, COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751)

Seq: MTHW01000059.1 Pseudomonas syringae pv. actinidiae strain C29 BV333_59, whole genome shotgun sequence (37468 bp)
Overview 1 RT 1: 30325-36261 bp Neighborhood of RT #1 [30325, 36296] modC_ABC Top1 RVT-GII Intron_maturas2 HNHc DUF2625 Feature: gene Location: 30325-31413 bp Ori: OSS05697.1 Gene: cysA_1 Feature: domain Description: modC_ABC Location: 30340-31405 bp Feature: domain Description: modC_ABC Location: 3034 0-314 05 bp Feature: gene Location: 31502-32557 bp Ori: OSS05698.1 Feature: domain Description: Top1 Location: 31535-32549 bp Feature: domain Description: Top1 Location: 31535-3254 9 bp Feature: gene Location: 33388-35223 bp Ori: OSS05699.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33649-34462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3364 9-34 4 62 bp Feature: domain Description: Intron_maturas2 Location: 34558-34873 bp Feature: domain Description: Intron_maturas2 Location: 34 558-34 873 bp Feature: domain Description: HNHc Note: nucleases Location: 34996-35161 bp Feature: domain Description: HNHc Note: nucleases Location: 34 996-35161 bp Feature: gene Location: 35661-36296 bp Ori: OSS05700.1 Feature: domain Description: DUF2625 Location: 35673-36261 bp Feature: domain Description: DUF2625 Location: 35673-36261 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT modC_ABC (TIGR02142), Top1 (COG3569), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF2625 (pfam10946)