myRT

myRT report for GCA_002175185.1_ASM217518v1

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Seq: MTHY01000189.1 Pseudomonas syringae pv. actinidiae strain C31 BV335_189, whole genome shotgun sequence (4908 bp)
Overview 1 RT 1: 1586-3858 bp Neighborhood of RT #1 [1586, 4610] UvrD_C RVT-UG9 Feature: gene Location: 1586-2530 bp Feature: gene Location: 2891-3613 bp Ori: OSS12531.1 Feature: domain Description: UvrD_C Location: 3347-3542 bp Feature: domain Description: UvrD_C Location: 3347-3542 bp Feature: gene Location: 3579-4610 bp Ori: OSS12532.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3582-3858 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3582-3858 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD_C (pfam13361), RVT-UG9

Seq: MTHY01000236.1 Pseudomonas syringae pv. actinidiae strain C31 BV335_236, whole genome shotgun sequence (1806 bp)
Overview 1 RT 1: 4-1165 bp Neighborhood of RT #1 [4, 1272] RVT-GII GIIM Feature: gene Location: 4-1272 bp Ori: OSS10934.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208-865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 08-865 bp Feature: domain Description: GIIM Note: maturase Location: 943-1165 bp Feature: domain Description: GIIM Note: maturase Location: 943-1165 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTHY01000058.1 Pseudomonas syringae pv. actinidiae strain C31 BV335_58, whole genome shotgun sequence (37468 bp)
Overview 1 RT 1: 30325-36261 bp Neighborhood of RT #1 [30325, 36296] modC_ABC Top1 RVT-GII Intron_maturas2 HNHc DUF2625 Feature: gene Location: 30325-31413 bp Ori: OSS17736.1 Gene: cysA_1 Feature: domain Description: modC_ABC Location: 30340-31405 bp Feature: domain Description: modC_ABC Location: 3 03 40-3 1405 bp Feature: gene Location: 31502-32557 bp Ori: OSS17737.1 Feature: domain Description: Top1 Location: 31535-32549 bp Feature: domain Description: Top1 Location: 3 153 5-3 2549 bp Feature: gene Location: 33388-35223 bp Ori: OSS17738.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33649-34462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 649-3 4462 bp Feature: domain Description: Intron_maturas2 Location: 34558-34873 bp Feature: domain Description: Intron_maturas2 Location: 3 4558-3 4873 bp Feature: domain Description: HNHc Note: nucleases Location: 34996-35161 bp Feature: domain Description: HNHc Note: nucleases Location: 3 4996-3 5161 bp Feature: gene Location: 35661-36296 bp Ori: OSS17739.1 Feature: domain Description: DUF2625 Location: 35673-36261 bp Feature: domain Description: DUF2625 Location: 3 5673 -3 6261 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT modC_ABC (TIGR02142), Top1 (COG3569), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF2625 (pfam10946)

Seq: MTHY01000037.1 Pseudomonas syringae pv. actinidiae strain C31 BV335_37, whole genome shotgun sequence (48344 bp)
Overview 1 RT 1: 41890-48271 bp Neighborhood of RT #1 [41890, 48312] trans_reg_C ComA-like_MBL-fold RVT-Retrons COG3666 DDE_Tnp_1_6 Feature: gene Location: 41890-42213 bp Ori: OSS18910.1 Gene: ctrA Feature: domain Description: trans_reg_C Location: 41914-42124 bp Feature: domain Description: trans_reg_C Location: 4 1914 -4 2124 bp Feature: gene Location: 43020-44438 bp Ori: OSS18911.1 Feature: domain Description: ComA-like_MBL-fold Location: 43569-44055 bp Feature: domain Description: ComA-like_MBL-fold Location: 4 3569-4 4 055 bp Feature: gene Location: 44882-46591 bp Ori: OSS18912.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45035-45632 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4 5035-4 5632 bp Feature: gene Location: 47089-48312 bp Ori: OSS18913.1 Feature: domain Description: COG3666 Location: 47131-47572 bp Feature: domain Description: COG3666 Location: 4 7131-4 7572 bp Feature: domain Description: DDE_Tnp_1_6 Location: 48049-48271 bp Feature: domain Description: DDE_Tnp_1_6 Location: 4 804 9-4 8271 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trans_reg_C (cd00383), ComA-like_MBL-fold (cd07731), RVT-Retrons, COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751)

Seq: MTHY01000206.1 Pseudomonas syringae pv. actinidiae strain C31 BV335_206, whole genome shotgun sequence (3087 bp)
Overview 1 RT 1: 263-2759 bp Neighborhood of RT #1 [263, 2806] RVT-UNC DUF1725 Feature: gene Location: 263-2806 bp Ori: OSS12043.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 563-1220 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 5 63-1220 bp Feature: domain Description: DUF1725 Location: 2705-2759 bp Feature: domain Description: DUF1725 Location: 2705 -275 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11/RVT-GII/RVT-CRISPR(RVT-UNC), DUF1725 (pfam08333)