myRT

myRT report for GCA_002175215.1_ASM217521v1

Download annotations/find similar RTs

Seq: MTHZ01000060.1 Pseudomonas syringae pv. actinidiae strain C48 BV336_60, whole genome shotgun sequence (37464 bp)
Overview 1 RT 1: 30336-36272 bp Neighborhood of RT #1 [30336, 36307] modC_ABC Top1 RVT-GII Intron_maturas2 HNHc DUF2625 Feature: gene Location: 30336-31424 bp Ori: OSS23036.1 Gene: cysA_1 Feature: domain Description: modC_ABC Location: 30351-31416 bp Feature: domain Description: modC_ABC Location: 30351 -31 41 6 bp Feature: gene Location: 31513-32568 bp Ori: OSS23037.1 Feature: domain Description: Top1 Location: 31546-32560 bp Feature: domain Description: Top1 Location: 31 546-32560 bp Feature: gene Location: 33399-35234 bp Ori: OSS23038.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33660-34473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33660-34473 bp Feature: domain Description: Intron_maturas2 Location: 34569-34884 bp Feature: domain Description: Intron_maturas2 Location: 34569-34884 bp Feature: domain Description: HNHc Note: nucleases Location: 35007-35172 bp Feature: domain Description: HNHc Note: nucleases Location: 35007-351 72 bp Feature: gene Location: 35672-36307 bp Ori: OSS23039.1 Feature: domain Description: DUF2625 Location: 35684-36272 bp Feature: domain Description: DUF2625 Location: 35684-36272 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT modC_ABC (TIGR02142), Top1 (COG3569), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF2625 (pfam10946)

Seq: MTHZ01000272.1 Pseudomonas syringae pv. actinidiae strain C48 BV336_272, whole genome shotgun sequence (1167 bp)
Overview 1 RT 1: 57-963 bp Neighborhood of RT #1 [57, 1097] RVT-GII GIIM Feature: gene Location: 57-1097 bp Ori: OSS14096.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63-678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63-678 bp Feature: domain Description: GIIM Note: maturase Location: 735-963 bp Feature: domain Description: GIIM Note: maturase Location: 735-963 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTHZ01000206.1 Pseudomonas syringae pv. actinidiae strain C48 BV336_206, whole genome shotgun sequence (3141 bp)
Overview 1 RT 1: 119-1938 bp Neighborhood of RT #1 [119, 2729] PRK14975 RVT-UG9 Feature: gene Location: 119-1666 bp Ori: OSS16520.1 Gene: polA_2 Feature: domain Description: PRK14975 Location: 887-1607 bp Feature: domain Description: PRK14975 Location: 887-1607 bp Feature: gene Location: 1659-2729 bp Ori: OSS16521.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 1662-1938 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 1662-193 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK14975 (bifunctional 3'-5' exonuclease/DNA polymerase; Provisional), RVT-UG9

Seq: MTHZ01000041.1 Pseudomonas syringae pv. actinidiae strain C48 BV336_41, whole genome shotgun sequence (47058 bp)
Overview 1 RT 1: 362-5080 bp Neighborhood of RT #1 [362, 5169] RVT-Retrons ComA-like_MBL-fold trans_reg_C Feature: gene Location: 362-2071 bp Ori: OSS23944.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 515-1112 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 515-1112 bp Feature: gene Location: 2594-4039 bp Ori: OSS23945.1 Feature: domain Description: ComA-like_MBL-fold Location: 3143-3629 bp Feature: domain Description: ComA-like_MBL-fold Location: 314 3-3629 bp Feature: gene Location: 4846-5169 bp Ori: OSS23946.1 Gene: ctrA Feature: domain Description: trans_reg_C Location: 4870-5080 bp Feature: domain Description: trans_reg_C Location: 4 870-5080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, ComA-like_MBL-fold (cd07731), trans_reg_C (cd00383)

Seq: MTHZ01000239.1 Pseudomonas syringae pv. actinidiae strain C48 BV336_239, whole genome shotgun sequence (1872 bp)
Overview 1 RT 1: 505-1615 bp Neighborhood of RT #1 [505, 1788] RVT-GII GIIM Feature: gene Location: 505-1788 bp Ori: OSS15659.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 745-1360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 745 -1360 bp Feature: domain Description: GIIM Note: maturase Location: 1405-1615 bp Feature: domain Description: GIIM Note: maturase Location: 1405 -1615 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)