myRT

myRT report for GCA_002175225.1_ASM217522v1

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Seq: MTIA01000286.1 Pseudomonas syringae pv. actinidiae strain C54 BV337_286, whole genome shotgun sequence (1167 bp)
Overview 1 RT 1: 57-963 bp Neighborhood of RT #1 [57, 1097] RVT-GII GIIM Feature: gene Location: 57-1097 bp Ori: OSS18370.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63-678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63-678 bp Feature: domain Description: GIIM Note: maturase Location: 735-963 bp Feature: domain Description: GIIM Note: maturase Location: 735-963 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTIA01000218.1 Pseudomonas syringae pv. actinidiae strain C54 BV337_218, whole genome shotgun sequence (3027 bp)
Overview 1 RT 1: 119-1938 bp Neighborhood of RT #1 [119, 2729] PRK14975 RVT-UG9 Feature: gene Location: 119-1666 bp Ori: OSS21329.1 Gene: polA_2 Feature: domain Description: PRK14975 Location: 887-1607 bp Feature: domain Description: PRK14975 Location: 887-1607 bp Feature: gene Location: 1659-2729 bp Ori: OSS21330.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 1662-1938 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 1662 -1938 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK14975 (bifunctional 3'-5' exonuclease/DNA polymerase; Provisional), RVT-UG9

Seq: MTIA01000041.1 Pseudomonas syringae pv. actinidiae strain C54 BV337_41, whole genome shotgun sequence (47421 bp)
Overview 1 RT 1: 362-5080 bp Neighborhood of RT #1 [362, 5169] RVT-Retrons ComA-like_MBL-fold trans_reg_C Feature: gene Location: 362-1954 bp Ori: OSS29563.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 398-995 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 98-995 bp Feature: gene Location: 2621-4039 bp Ori: OSS29564.1 Feature: domain Description: ComA-like_MBL-fold Location: 3170-3656 bp Feature: domain Description: ComA-like_MBL-fold Location: 3 170-3 656 bp Feature: gene Location: 4846-5169 bp Ori: OSS29565.1 Gene: ctrA Feature: domain Description: trans_reg_C Location: 4870-5080 bp Feature: domain Description: trans_reg_C Location: 4870-5080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, ComA-like_MBL-fold (cd07731), trans_reg_C (cd00383)

Seq: MTIA01000057.1 Pseudomonas syringae pv. actinidiae strain C54 BV337_57, whole genome shotgun sequence (37760 bp)
Overview 1 RT 1: 30336-37678 bp Neighborhood of RT #1 [30336, 37678] modC_ABC Top1 RVT-GII Intron_maturas2 HNHc DUF2625 Feature: gene Location: 30336-31424 bp Ori: OSS28789.1 Gene: cysA_1 Feature: domain Description: modC_ABC Location: 30351-31416 bp Feature: domain Description: modC_ABC Location: 30351-314 16 bp Feature: gene Location: 31513-32568 bp Ori: OSS28790.1 Feature: domain Description: Top1 Location: 31546-32560 bp Feature: domain Description: Top1 Location: 3154 6-32560 bp Feature: gene Location: 33399-35234 bp Ori: OSS28791.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33660-34473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33660-34 4 73 bp Feature: domain Description: Intron_maturas2 Location: 34569-34884 bp Feature: domain Description: Intron_maturas2 Location: 34 569-34 884 bp Feature: domain Description: HNHc Note: nucleases Location: 35007-35172 bp Feature: domain Description: HNHc Note: nucleases Location: 35007-35172 bp Feature: gene Location: 35672-36307 bp Ori: OSS28792.1 Feature: domain Description: DUF2625 Location: 35684-36272 bp Feature: domain Description: DUF2625 Location: 35684 -36272 bp Feature: gene Location: 37448-37678 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT modC_ABC (TIGR02142), Top1 (COG3569), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF2625 (pfam10946)

Seq: MTIA01000020.1 Pseudomonas syringae pv. actinidiae strain C54 BV337_20, whole genome shotgun sequence (67608 bp)
Overview 1 RT 1: 65165-67302 bp Neighborhood of RT #1 [65165, 67409] RVT-GII GIIM Feature: gene Location: 65165-65881 bp Feature: gene Location: 65940-66107 bp Feature: gene Location: 66141-67409 bp Ori: OSS31004.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66345-67002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66345 -67002 bp Feature: domain Description: GIIM Note: maturase Location: 67080-67302 bp Feature: domain Description: GIIM Note: maturase Location: 67080-67302 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTIA01000246.1 Pseudomonas syringae pv. actinidiae strain C54 BV337_246, whole genome shotgun sequence (1872 bp)
Overview 1 RT 1: 85-1195 bp Neighborhood of RT #1 [85, 1368] RVT-GII GIIM Feature: gene Location: 85-1368 bp Ori: OSS19836.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 325-940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 325-940 bp Feature: domain Description: GIIM Note: maturase Location: 985-1195 bp Feature: domain Description: GIIM Note: maturase Location: 985-1195 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)