myRT

myRT report for GCA_002175245.1_ASM217524v1

Download annotations/find similar RTs

Seq: MTIB01000317.1 Pseudomonas syringae pv. actinidiae strain C62 BV338_317, whole genome shotgun sequence (550 bp)
Overview 1 RT 1: 19-439 bp Neighborhood of RT #1 [19, 480] RVT-GII Feature: gene Location: 19-480 bp Ori: OSS23047.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25-439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25-439 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MTIB01000191.1 Pseudomonas syringae pv. actinidiae strain C62 BV338_191, whole genome shotgun sequence (5071 bp)
Overview 1 RT 1: 1585-3857 bp Neighborhood of RT #1 [1585, 4609] UvrD_C RVT-UG9 Feature: gene Location: 1585-2529 bp Feature: gene Location: 2890-3480 bp Ori: OSS28269.1 Feature: domain Description: UvrD_C Location: 3214-3409 bp Feature: domain Description: UvrD_C Location: 32 14-3409 bp Feature: gene Location: 3578-4609 bp Ori: OSS28270.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3581-3857 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3581-3857 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD_C (pfam13361), RVT-UG9

Seq: MTIB01000246.1 Pseudomonas syringae pv. actinidiae strain C62 BV338_246, whole genome shotgun sequence (1587 bp)
Overview 1 RT 1: 4-1165 bp Neighborhood of RT #1 [4, 1272] RVT-GII GIIM Feature: gene Location: 4-1272 bp Ori: OSS25679.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208-865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208-865 bp Feature: domain Description: GIIM Note: maturase Location: 943-1165 bp Feature: domain Description: GIIM Note: maturase Location: 943 -1165 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTIB01000057.1 Pseudomonas syringae pv. actinidiae strain C62 BV338_57, whole genome shotgun sequence (37749 bp)
Overview 1 RT 1: 30325-37667 bp Neighborhood of RT #1 [30325, 37667] modC_ABC Top1 RVT-GII Intron_maturas2 HNHc DUF2625 Feature: gene Location: 30325-31413 bp Ori: OSS34095.1 Gene: cysA_1 Feature: domain Description: modC_ABC Location: 30340-31405 bp Feature: domain Description: modC_ABC Location: 3034 0-314 05 bp Feature: gene Location: 31502-32557 bp Ori: OSS34096.1 Feature: domain Description: Top1 Location: 31535-32549 bp Feature: domain Description: Top1 Location: 31535-3254 9 bp Feature: gene Location: 33388-35223 bp Ori: OSS34097.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33649-34462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3364 9-34 4 62 bp Feature: domain Description: Intron_maturas2 Location: 34558-34873 bp Feature: domain Description: Intron_maturas2 Location: 34 558-34 873 bp Feature: domain Description: HNHc Note: nucleases Location: 34996-35161 bp Feature: domain Description: HNHc Note: nucleases Location: 34 996-35161 bp Feature: gene Location: 35661-36296 bp Ori: OSS34098.1 Feature: domain Description: DUF2625 Location: 35673-36261 bp Feature: domain Description: DUF2625 Location: 35673-36261 bp Feature: gene Location: 37437-37667 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT modC_ABC (TIGR02142), Top1 (COG3569), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF2625 (pfam10946)

Seq: MTIB01000039.1 Pseudomonas syringae pv. actinidiae strain C62 BV338_39, whole genome shotgun sequence (48625 bp)
Overview 1 RT 1: 41890-48543 bp Neighborhood of RT #1 [41890, 48543] trans_reg_C ComA-like_MBL-fold RVT-Retrons COG3666 DDE_Tnp_1_6 Feature: gene Location: 41890-42213 bp Ori: OSS34811.1 Gene: ctrA Feature: domain Description: trans_reg_C Location: 41914-42124 bp Feature: domain Description: trans_reg_C Location: 41914-42124 bp Feature: gene Location: 43020-44438 bp Ori: OSS34812.1 Feature: domain Description: ComA-like_MBL-fold Location: 43569-44055 bp Feature: domain Description: ComA-like_MBL-fold Location: 435 69-4405 5 bp Feature: gene Location: 44882-46591 bp Ori: OSS34813.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45035-45632 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45 035 -45 632 bp Feature: gene Location: 47089-48312 bp Ori: OSS34814.1 Feature: domain Description: COG3666 Location: 47131-47572 bp Feature: domain Description: COG3666 Location: 47131-475 72 bp Feature: domain Description: DDE_Tnp_1_6 Location: 48049-48271 bp Feature: domain Description: DDE_Tnp_1_6 Location: 48049-48271 bp Feature: gene Location: 48313-48543 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trans_reg_C (cd00383), ComA-like_MBL-fold (cd07731), RVT-Retrons, COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751)