myRT

myRT report for GCA_002176975.1_ASM217697v1

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Seq: MSYH01000143.1 Bacterium I07 isolate I07 NODE_30_length_9653_cov_243.692, whole genome shotgun sequence (9653 bp)
Overview 1 RT 1: 5957-9231 bp Neighborhood of RT #1 [5957, 9266] Avd_like Fib_succ_major RVT-DGRs SSB Phage_integrase Feature: gene Location: 5957-6310 bp Feature: domain Description: Avd_like Location: 5984-6290 bp Feature: domain Description: Avd_like Location: 5984-6290 bp Feature: gene Location: 6348-6746 bp Feature: domain Description: Fib_succ_major Location: 6435-6639 bp Feature: domain Description: Fib_succ_major Location: 6435-6639 bp Feature: gene Location: 6697-7905 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6916-7621 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 691 6-7621 bp Feature: gene Location: 8025-8405 bp Feature: domain Description: SSB Location: 8028-8319 bp Feature: domain Description: SSB Location: 8028-831 9 bp Feature: gene Location: 8547-9266 bp Feature: domain Description: Phage_integrase Location: 8667-9231 bp Feature: domain Description: Phage_integrase Location: 8667-9231 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), Fib_succ_major (TIGR02145), RVT-DGRs, SSB (pfam00436), Phage_integrase (pfam00589)

Seq: MSYH01000134.1 Bacterium I07 isolate I07 NODE_22_length_12574_cov_1461.72, whole genome shotgun sequence (12574 bp)
Overview 1 RT 1: 414-3917 bp Neighborhood of RT #1 [414, 3917] HicB HicA_toxin RVT-GII rve_3 Feature: gene Location: 414-623 bp Feature: domain Description: HicB Location: 417-606 bp Feature: domain Description: HicB Location: 417-606 bp Feature: gene Location: 616-873 bp Feature: domain Description: HicA_toxin Location: 685-829 bp Feature: domain Description: HicA_toxin Location: 685-82 9 bp Feature: gene Location: 1594-2913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1849-2539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1849-2 539 bp Feature: gene Location: 3018-3281 bp Feature: domain Description: rve_3 Location: 3039-3180 bp Feature: domain Description: rve_3 Location: 3039-3180 bp Feature: gene Location: 3366-3917 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, rve_3 (pfam13683), HicB (pfam05534), HicA_toxin (pfam07927)

Seq: MSYH01000044.1 Bacterium I07 isolate I07 NODE_13_length_19655_cov_97.1001, whole genome shotgun sequence (19655 bp)
Overview 1 RT 1: 9378-12428 bp Neighborhood of RT #1 [9378, 12428] RVT-CRISPR-like Feature: gene Location: 9378-10373 bp Feature: gene Location: 10426-10716 bp Feature: gene Location: 10820-11770 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 11186-11696 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 11186-11696 bp Feature: gene Location: 11786-12169 bp Feature: gene Location: 12177-12428 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: MSYH01000142.1 Bacterium I07 isolate I07 NODE_2_length_38144_cov_121.395, whole genome shotgun sequence (38144 bp)
Overview 1 RT 1: 2049-9876 bp Neighborhood of RT #1 [2049, 9884] RVT-GII GIIM RVT-GII RVT-GII GIIM MhpC PHA02517 Feature: gene Location: 2049-2243 bp Feature: gene Location: 2487-2699 bp Feature: gene Location: 2846-4189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3122-3746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3122-374 6 bp Feature: domain Description: GIIM Note: maturase Location: 3848-4052 bp Feature: domain Description: GIIM Note: maturase Location: 384 8-4 052 bp Feature: gene Location: 4350-5699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4629-5256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 629-5256 bp Feature: gene Location: 6257-7540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6542-7181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 654 2-7181 bp Feature: domain Description: GIIM Note: maturase Location: 7253-7472 bp Feature: domain Description: GIIM Note: maturase Location: 7253-74 72 bp Feature: gene Location: 8007-8870 bp Feature: domain Description: MhpC Location: 8124-8856 bp Feature: domain Description: MhpC Location: 8124 -8856 bp Feature: gene Location: 9018-9884 bp Feature: domain Description: PHA02517 Location: 9084-9876 bp Feature: domain Description: PHA02517 Location: 9084 -9876 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), MhpC (COG0596), PHA02517 (putative transposase OrfB; Reviewed)