myRT

myRT report for GCA_002177125.1_ASM217712v1

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Seq: NIGO01000002.1 Pseudomonas koreensis strain P2 scaffold2, whole genome shotgun sequence (826643 bp)
Overview 1 RT 1: 800455-807942 bp Neighborhood of RT #1 [800455, 808025] RVT-G2L4 RVT-UG5 Acetyltransf_3 Acetyltransf_7 Feature: gene Location: 800455-800688 bp Feature: gene Location: 801996-802214 bp Feature: gene Location: 802251-803513 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 802470-803055 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 802470-803055 bp Feature: gene Location: 803804-805750 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 804275-804794 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 804275-804794 bp Feature: gene Location: 806897-807412 bp Feature: domain Description: Acetyltransf_3 Location: 806939-807344 bp Feature: domain Description: Acetyltransf_3 Location: 806939-807344 bp Feature: gene Location: 807531-808025 bp Feature: domain Description: Acetyltransf_7 Location: 807720-807942 bp Feature: domain Description: Acetyltransf_7 Location: 807720-807942 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-G2L4, RVT-UG5, Acetyltransf_3 (pfam13302), Acetyltransf_7 (pfam13508)

Seq: NIGO01000006.1 Pseudomonas koreensis strain P2 scaffold6, whole genome shotgun sequence (226833 bp)
Overview 1 RT 1: 193871-202199 bp Neighborhood of RT #1 [193871, 202207] PRK10770 LptD RVT_N RVT-GII GIIM HNH COG3178 Feature: gene Location: 193871-195211 bp Feature: domain Description: PRK10770 Location: 193955-195161 bp Feature: domain Description: PRK10770 Location: 193955-195161 bp Feature: gene Location: 195186-198026 bp Feature: domain Description: LptD Location: 195525-198009 bp Feature: domain Description: LptD Location: 19552 5-198009 bp Feature: gene Location: 198170-199879 bp Feature: domain Description: RVT_N Location: 198227-198470 bp Feature: domain Description: RVT_N Location: 1982 2 7-198470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 198515-199151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 198515-199151 bp Feature: domain Description: GIIM Note: maturase Location: 199202-199436 bp Feature: domain Description: GIIM Note: maturase Location: 1992 02 -199436 bp Feature: domain Description: HNH Note: nucleases Location: 199688-199826 bp Feature: domain Description: HNH Note: nucleases Location: 199688-19982 6 bp Feature: gene Location: 200203-200367 bp Feature: gene Location: 201182-202207 bp Feature: domain Description: COG3178 Location: 201200-202199 bp Feature: domain Description: COG3178 Location: 2 012 00-2 02 199 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: NIGO01000007.1 Pseudomonas koreensis strain P2 scaffold7, whole genome shotgun sequence (438962 bp)
Overview 1 RT 1: 268920-274162 bp Neighborhood of RT #1 [268920, 274191] ACR3 DDE_Tnp_IS66_C RVT_N RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Feature: gene Location: 268920-269882 bp Feature: domain Description: ACR3 Location: 268935-269862 bp Feature: domain Description: ACR3 Location: 26893 5-269862 bp Feature: gene Location: 269921-270055 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 269927-270038 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 269927-27003 8 bp Feature: gene Location: 270247-271908 bp Feature: domain Description: RVT_N Location: 270292-270535 bp Feature: domain Description: RVT_N Location: 270292-27053 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 270580-271216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 270580-271216 bp Feature: domain Description: GIIM Note: maturase Location: 271273-271501 bp Feature: domain Description: GIIM Note: maturase Location: 271273 -271501 bp Feature: gene Location: 272466-273794 bp Feature: domain Description: LZ_Tnp_IS66 Location: 272598-272805 bp Feature: domain Description: LZ_Tnp_IS66 Location: 272598-272805 bp Feature: domain Description: zf-IS66 Location: 272844-272958 bp Feature: domain Description: zf-IS66 Location: 272844-272958 bp Feature: domain Description: DDE_Tnp_IS66 Location: 273000-273774 bp Feature: domain Description: DDE_Tnp_IS66 Location: 273 000-273 774 bp Feature: gene Location: 273856-274191 bp Feature: domain Description: TnpB_IS66 Location: 273874-274162 bp Feature: domain Description: TnpB_IS66 Location: 273 874-274162 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ACR3 (COG0798), DDE_Tnp_IS66_C (pfam13817), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717)