myRT

myRT report for GCA_002180435.1_14207_7_48

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Seq: CZBC01000048.1 Fusicatenibacter sp. 2789STDY5834925 genome assembly, contig: SCcontig000048, whole genome shotgun sequence (33015 bp)
Overview 1 RT 1: 29619-32163 bp Neighborhood of RT #1 [29619, 32273] DUF3851 RVT-GII HNHc Feature: gene Location: 29619-29993 bp Feature: domain Description: DUF3851 Location: 29622-29991 bp Feature: domain Description: DUF3851 Location: 29622-29991 bp Feature: gene Location: 29996-30211 bp Feature: gene Location: 30393-32273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30726-31443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30726-31 443 bp Feature: domain Description: HNHc Note: nucleases Location: 32025-32163 bp Feature: domain Description: HNHc Note: nucleases Location: 32025-321 63 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3851 (pfam12962), RVT-GII, HNHc (smart00507)

Seq: CZBC01000018.1 Fusicatenibacter sp. 2789STDY5834925 genome assembly, contig: SCcontig000018, whole genome shotgun sequence (154341 bp)
Overview 1 RT 1: 107825-112577 bp Neighborhood of RT #1 [107825, 112577] RVT-DGRs Feature: gene Location: 107825-108853 bp Feature: gene Location: 108846-110411 bp Feature: gene Location: 110748-112010 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 110964-111666 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 110964-111666 bp Feature: gene Location: 111997-112362 bp Feature: gene Location: 112359-112577 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: CZBC01000016.1 Fusicatenibacter sp. 2789STDY5834925 genome assembly, contig: SCcontig000016, whole genome shotgun sequence (169833 bp)
Overview 1 RT 1: 135596-141846 bp Neighborhood of RT #1 [135596, 141854] tRNA_anti_2 RVT-Retrons List_Bact_rpt DAP-DH Feature: gene Location: 135596-136174 bp Feature: domain Description: tRNA_anti_2 Location: 135893-136139 bp Feature: domain Description: tRNA_anti_2 Location: 13 5893 -13 613 9 bp Feature: gene Location: 136275-136574 bp Feature: gene Location: 136609-137592 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 136777-137332 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13 6777-13 73 3 2 bp Feature: gene Location: 138161-141013 bp Feature: domain Description: List_Bact_rpt Location: 140591-140705 bp Feature: domain Description: List_Bact_rpt Location: 140591-140705 bp Feature: gene Location: 140868-141854 bp Feature: domain Description: DAP-DH Location: 140874-141846 bp Feature: domain Description: DAP-DH Location: 140874-141846 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT tRNA_anti_2 (pfam13742), RVT-Retrons, List_Bact_rpt (TIGR02543), DAP-DH (TIGR01921)

Seq: CZBC01000030.1 Fusicatenibacter sp. 2789STDY5834925 genome assembly, contig: SCcontig000030, whole genome shotgun sequence (84926 bp)
Overview 1 RT 1: 13734-18777 bp Neighborhood of RT #1 [13734, 18785] RVT-Retrons AmpC PRK10219 AraC_E_bind Feature: gene Location: 13734-13958 bp Feature: gene Location: 14066-14983 bp Feature: gene Location: 15145-16164 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15295-15853 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15295-15853 bp Feature: gene Location: 16857-17828 bp Feature: domain Description: AmpC Location: 16926-17760 bp Feature: domain Description: AmpC Location: 16926-17760 bp Feature: gene Location: 17910-18785 bp Feature: domain Description: PRK10219 Location: 17931-18225 bp Feature: domain Description: PRK10219 Location: 17931-18225 bp Feature: domain Description: AraC_E_bind Location: 18294-18777 bp Feature: domain Description: AraC_E_bind Location: 18294 -18777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, AmpC (COG1680), PRK10219 (superoxide response transcriptional regulator SoxS), AraC_E_bind (smart00871)

Seq: CZBC01000013.1 Fusicatenibacter sp. 2789STDY5834925 genome assembly, contig: SCcontig000013, whole genome shotgun sequence (213327 bp)
Overview 1 RT 1: 97521-101906 bp Neighborhood of RT #1 [97521, 101908] FlgJ Phage_holin_4_1 RVT-DGRs Avd_like PHA00653 Feature: gene Location: 97521-98465 bp Feature: domain Description: FlgJ Location: 97539-98010 bp Feature: domain Description: FlgJ Location: 975 39-98010 bp Feature: gene Location: 98469-98897 bp Feature: domain Description: Phage_holin_4_1 Location: 98523-98850 bp Feature: domain Description: Phage_holin_4_1 Location: 985 23-9885 0 bp Feature: gene Location: 98969-100009 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 99179-99794 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 99179-99794 bp Feature: gene Location: 100365-100754 bp Feature: domain Description: Avd_like Location: 100425-100728 bp Feature: domain Description: Avd_like Location: 100425 -100728 bp Feature: gene Location: 100814-101908 bp Feature: domain Description: PHA00653 Location: 100907-101906 bp Feature: domain Description: PHA0065 3 Location: 100907-101906 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), PHA00653 (mtd;major tropism determinant), FlgJ (COG1705), Phage_holin_4_1 (pfam05105), RVT-DGRs

Seq: CZBC01000017.1 Fusicatenibacter sp. 2789STDY5834925 genome assembly, contig: SCcontig000017, whole genome shotgun sequence (166833 bp)
Overview 1 RT 1: 11511-17331 bp Neighborhood of RT #1 [11511, 17331] EmrA EmrA RluA RVT-GII GIIM Feature: gene Location: 11511-13094 bp Feature: domain Description: EmrA Location: 11775-11997 bp Feature: domain Description: EmrA Location: 11775-11997 bp Feature: domain Description: EmrA Location: 12393-12960 bp Feature: domain Description: EmrA Location: 12393-1296 0 bp Feature: gene Location: 13500-14387 bp Feature: domain Description: RluA Location: 13539-14364 bp Feature: domain Description: RluA Location: 13539-1436 4 bp Feature: gene Location: 14461-15759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14683-15310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146 83-15310 bp Feature: domain Description: GIIM Note: maturase Location: 15364-15592 bp Feature: domain Description: GIIM Note: maturase Location: 1536 4-15592 bp Feature: gene Location: 16375-16710 bp Feature: gene Location: 16777-17331 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EmrA (COG1566), RluA (COG0564), RVT-GII, GIIM (pfam08388)

Seq: CZBC01000010.1 Fusicatenibacter sp. 2789STDY5834925 genome assembly, contig: SCcontig000010, whole genome shotgun sequence (237655 bp)
Overview 1 RT 1: 14820-18624 bp Neighborhood of RT #1 [14820, 18806] HipB RVT-GII GIIM HTH_XRE Feature: gene Location: 14820-15632 bp Feature: gene Location: 15883-16209 bp Feature: domain Description: HipB Location: 15901-16144 bp Feature: domain Description: HipB Location: 15901-16144 bp Feature: gene Location: 16759-18063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16960-17578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16960-17 57 8 bp Feature: domain Description: GIIM Note: maturase Location: 17632-17842 bp Feature: domain Description: GIIM Note: maturase Location: 17 632-17 842 bp Feature: gene Location: 18176-18352 bp Feature: gene Location: 18435-18806 bp Feature: domain Description: HTH_XRE Location: 18465-18624 bp Feature: domain Description: HTH_XRE Location: 18465-18624 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipB (COG1396), RVT-GII, GIIM (pfam08388), HTH_XRE (smart00530)

Seq: CZBC01000036.1 Fusicatenibacter sp. 2789STDY5834925 genome assembly, contig: SCcontig000036, whole genome shotgun sequence (72101 bp)
Overview 1 RT 1: 62064-65879 bp Neighborhood of RT #1 [62064, 65879] Avd_like RVT-DGRs Feature: gene Location: 62064-63110 bp Feature: gene Location: 63196-63606 bp Feature: domain Description: Avd_like Location: 63256-63580 bp Feature: domain Description: Avd_like Location: 63256-6358 0 bp Feature: gene Location: 63965-65179 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 64175-64838 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 64175-648 38 bp Feature: gene Location: 65169-65480 bp Feature: gene Location: 65496-65879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs

Seq: CZBC01000051.1 Fusicatenibacter sp. 2789STDY5834925 genome assembly, contig: SCcontig000051, whole genome shotgun sequence (28533 bp)
Overview 1 RT 1: 3229-12046 bp Neighborhood of RT #1 [3229, 12060] Maff2 RVT-GII HNHc RVT-GII Intron_maturas2 HNHc DUF3801 Feature: gene Location: 3229-4098 bp Feature: gene Location: 4168-4386 bp Feature: domain Description: Maff2 Location: 4171-4378 bp Feature: domain Description: Maff2 Location: 4171-4378 bp Feature: gene Location: 5664-7463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5943-6651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59 43-6651 bp Feature: domain Description: HNHc Note: nucleases Location: 7272-7377 bp Feature: domain Description: HNHc Note: nucleases Location: 7272-7377 bp Feature: gene Location: 8680-10497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8944-9763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89 44-9 763 bp Feature: domain Description: Intron_maturas2 Location: 9835-10138 bp Feature: domain Description: Intron_maturas2 Location: 9 835-10138 bp Feature: domain Description: HNHc Note: nucleases Location: 10318-10462 bp Feature: domain Description: HNHc Note: nucleases Location: 10318-10462 bp Feature: gene Location: 11057-11563 bp Feature: gene Location: 11560-12060 bp Feature: domain Description: DUF3801 Location: 11629-12046 bp Feature: domain Description: DUF3801 Location: 11629 -12046 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Maff2 (pfam12750), RVT-GII, HNHc (smart00507), Intron_maturas2 (pfam01348)