myRT

myRT report for GCA_002181955.1_ASM218195v1

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Seq: NDDH01000034.1 Klebsiella pneumoniae strain 43421 43421_NODE_16.ctg_1, whole genome shotgun sequence (97030 bp)
Overview 1 RT 1: 27302-32614 bp Neighborhood of RT #1 [27302, 32778] PRK09692 RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 27302-28548 bp Feature: domain Description: PRK09692 Location: 27311-28205 bp Feature: domain Description: PRK09692 Location: 2731 1 -28205 bp Feature: gene Location: 28550-29191 bp Feature: gene Location: 29617-30582 bp Ori: OVI01010.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 29725-30322 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 29725-30322 bp Feature: gene Location: 30560-32152 bp Ori: OVI01011.1 Feature: domain Description: COG3950 Location: 30740-31961 bp Feature: domain Description: COG3950 Location: 30740-31 961 bp Feature: gene Location: 32137-32778 bp Ori: OVI01012.1 Feature: domain Description: TIGR02646 Location: 32239-32614 bp Feature: domain Description: TIGR02646 Location: 32239-3261 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: NDDH01000042.1 Klebsiella pneumoniae strain 43421 43421_NODE_4.ctg_1, whole genome shotgun sequence (376942 bp)
Overview 1 RT 1: 335034-339031 bp Neighborhood of RT #1 [335034, 339181] PRK09692 PRK09692 SLATT_5 RVT-UG17 Psu Feature: gene Location: 335034-336007 bp Feature: domain Description: PRK09692 Location: 335043-335406 bp Feature: domain Description: PRK09692 Location: 335043-335406 bp Feature: domain Description: PRK09692 Location: 335427-335799 bp Feature: domain Description: PRK09692 Location: 33542 7-335799 bp Feature: gene Location: 336060-336701 bp Ori: OVH99309.1 Feature: domain Description: SLATT_5 Location: 336063-336666 bp Feature: domain Description: SLATT_5 Location: 336063-336666 bp Feature: gene Location: 336896-338305 bp Ori: OVH99258.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 337133-337745 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 337133-337745 bp Feature: gene Location: 338487-338622 bp Feature: gene Location: 338632-339181 bp Feature: domain Description: Psu Location: 338650-339031 bp Feature: domain Description: Psu Location: 338650-339031 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), SLATT_5 (pfam18160), RVT-UG17, Psu (pfam07455)

Seq: NDDH01000012.1 Klebsiella pneumoniae strain 43421 43421_NODE_27.ctg_1, whole genome shotgun sequence (23849 bp)
Overview 1 RT 1: 20646-23800 bp Neighborhood of RT #1 [20646, 23835] InsE RVT-GII GIIM PHA02517 Feature: gene Location: 20646-21352 bp Feature: domain Description: InsE Location: 20658-20922 bp Feature: domain Description: InsE Location: 20658-20922 bp Feature: gene Location: 21324-21695 bp Feature: gene Location: 21989-23512 bp Ori: OVI05761.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22262-22994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22262-22994 bp Feature: domain Description: GIIM Note: maturase Location: 23108-23267 bp Feature: domain Description: GIIM Note: maturase Location: 23 108-23 267 bp Feature: gene Location: 23623-23835 bp Ori: OVI05762.1 Feature: domain Description: PHA02517 Location: 23626-23800 bp Feature: domain Description: PHA02517 Location: 23 626-23 800 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)