myRT

myRT report for GCA_002182025.1_ASM218202v1

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Seq: NDEG01000107.1 Escherichia coli strain 42189 42189_NODE_7.ctg_1, whole genome shotgun sequence (178328 bp)
Overview 1 RT 1: 23643-27934 bp Neighborhood of RT #1 [23643, 27934] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 23643-24872 bp Ori: OVJ45804.1 Feature: domain Description: YesM Location: 24123-24864 bp Feature: domain Description: YesM Location: 241 23-24864 bp Feature: gene Location: 24945-25133 bp Feature: gene Location: 25455-25976 bp Ori: OVJ45665.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25461-25743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25461 -25743 bp Feature: domain Description: GIIM Note: maturase Location: 25791-25971 bp Feature: domain Description: GIIM Note: maturase Location: 25791 -25971 bp Feature: gene Location: 26004-26543 bp Ori: OVJ45666.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26334-26412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26334-2641 2 bp Feature: gene Location: 26768-27055 bp Feature: gene Location: 27029-27934 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: NDEG01000081.1 Escherichia coli strain 42189 42189_NODE_17.ctg_1, whole genome shotgun sequence (76950 bp)
Overview 1 RT 1: 72499-76035 bp Neighborhood of RT #1 [72499, 76687] PRK09678 RVT-Retrons Arm-DNA-bind_3 Feature: gene Location: 72499-72771 bp Ori: OVJ49250.1 Feature: domain Description: PRK09678 Location: 72508-72664 bp Feature: domain Description: PRK09678 Location: 72 508-72 664 bp Feature: gene Location: 73417-74385 bp Feature: gene Location: 74387-75319 bp Ori: OVJ49252.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 74489-75083 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 74489-75083 bp Feature: gene Location: 75774-76687 bp Feature: domain Description: Arm-DNA-bind_3 Location: 75783-76035 bp Feature: domain Description: Arm-DNA-bind_3 Location: 75783-76035 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-Retrons, Arm-DNA-bind_3 (pfam13356)

Seq: NDEG01000095.1 Escherichia coli strain 42189 42189_NODE_52.ctg_1, whole genome shotgun sequence (24381 bp)
Overview 1 RT 1: 19439-24154 bp Neighborhood of RT #1 [19439, 24154] psiB RVT-GII Intron_maturas2 HNHc Feature: gene Location: 19439-19873 bp Ori: OVJ47861.1 Gene: psiB Feature: domain Description: psiB Location: 19442-19868 bp Feature: domain Description: psiB Location: 19442-19868 bp Feature: gene Location: 19926-21215 bp Feature: gene Location: 21398-23299 bp Ori: OVJ47857.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21665-22496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21665-22496 bp Feature: domain Description: Intron_maturas2 Location: 22610-22868 bp Feature: domain Description: Intron_maturas2 Location: 22610-22868 bp Feature: domain Description: HNHc Note: nucleases Location: 23042-23204 bp Feature: domain Description: HNHc Note: nucleases Location: 23 042-23 204 bp Feature: gene Location: 23948-24154 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT psiB (PRK13701), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)